Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02515 and AZOBR_RS02520 are separated by 109 nucleotides AZOBR_RS02520 and AZOBR_RS02525 are separated by 124 nucleotides AZOBR_RS02525 and AZOBR_RS02530 are separated by 116 nucleotides
AZOBR_RS02515: AZOBR_RS02515 - cytochrome C, at 525,264 to 526,394
_RS02515
AZOBR_RS02520: AZOBR_RS02520 - hypothetical protein, at 526,504 to 526,767
_RS02520
AZOBR_RS02525: AZOBR_RS02525 - NAD(FAD)-utilizing dehydrogenase, at 526,892 to 528,139
_RS02525
AZOBR_RS02530: AZOBR_RS02530 - carboxypeptidase, at 528,256 to 530,430
_RS02530
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 526.032 kb on + strand, within AZOBR_RS02515 at 526.033 kb on - strand, within AZOBR_RS02515 at 526.033 kb on - strand, within AZOBR_RS02515 at 526.180 kb on - strand, within AZOBR_RS02515 at 526.180 kb on - strand, within AZOBR_RS02515 at 526.209 kb on + strand, within AZOBR_RS02515 at 526.225 kb on - strand, within AZOBR_RS02515 at 526.225 kb on - strand, within AZOBR_RS02515 at 526.359 kb on + strand at 526.359 kb on + strand at 526.359 kb on + strand at 526.360 kb on - strand at 526.360 kb on - strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.421 kb on + strand at 526.422 kb on - strand at 526.422 kb on - strand at 526.422 kb on - strand at 526.422 kb on - strand at 526.651 kb on + strand, within AZOBR_RS02520 at 527.021 kb on + strand, within AZOBR_RS02525 at 527.021 kb on + strand, within AZOBR_RS02525 at 527.022 kb on - strand, within AZOBR_RS02525 at 527.660 kb on + strand, within AZOBR_RS02525 at 528.068 kb on + strand at 528.069 kb on - strand at 528.126 kb on - strand at 528.197 kb on + strand at 528.245 kb on + strand at 528.245 kb on + strand at 528.246 kb on - strand at 528.246 kb on - strand at 528.246 kb on - strand at 528.282 kb on - strand at 528.347 kb on - strand at 528.815 kb on + strand, within AZOBR_RS02530 at 528.815 kb on + strand, within AZOBR_RS02530 at 528.815 kb on + strand, within AZOBR_RS02530 at 528.816 kb on - strand, within AZOBR_RS02530 at 529.060 kb on + strand, within AZOBR_RS02530 at 529.061 kb on + strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530 at 529.062 kb on - strand, within AZOBR_RS02530
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 526,032 + AZOBR_RS02515 0.68 +0.7 526,033 - AZOBR_RS02515 0.68 +0.1 526,033 - AZOBR_RS02515 0.68 -1.4 526,180 - AZOBR_RS02515 0.81 -0.4 526,180 - AZOBR_RS02515 0.81 +1.2 526,209 + AZOBR_RS02515 0.84 -1.6 526,225 - AZOBR_RS02515 0.85 +1.6 526,225 - AZOBR_RS02515 0.85 -1.5 526,359 + -2.4 526,359 + +0.4 526,359 + -2.6 526,360 - +0.6 526,360 - +5.9 526,421 + +0.7 526,421 + -0.4 526,421 + +0.6 526,421 + +0.8 526,421 + +0.2 526,422 - +0.2 526,422 - -2.2 526,422 - +1.1 526,422 - +0.1 526,651 + AZOBR_RS02520 0.56 +0.3 527,021 + AZOBR_RS02525 0.10 -0.4 527,021 + AZOBR_RS02525 0.10 -0.6 527,022 - AZOBR_RS02525 0.10 -1.5 527,660 + AZOBR_RS02525 0.62 -0.6 528,068 + -2.5 528,069 - -0.8 528,126 - -0.6 528,197 + -0.4 528,245 + -0.7 528,245 + +1.7 528,246 - +0.5 528,246 - -0.3 528,246 - -0.6 528,282 - -0.8 528,347 - +0.2 528,815 + AZOBR_RS02530 0.26 +0.3 528,815 + AZOBR_RS02530 0.26 -0.4 528,815 + AZOBR_RS02530 0.26 +1.2 528,816 - AZOBR_RS02530 0.26 -0.5 529,060 + AZOBR_RS02530 0.37 -3.1 529,061 + AZOBR_RS02530 0.37 -0.9 529,062 - AZOBR_RS02530 0.37 -0.9 529,062 - AZOBR_RS02530 0.37 -1.5 529,062 - AZOBR_RS02530 0.37 -0.0 529,062 - AZOBR_RS02530 0.37 -2.0
Or see this region's nucleotide sequence