Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21845

Experiment: adipate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS21830 and ABZR87_RS21835 overlap by 11 nucleotidesABZR87_RS21835 and ABZR87_RS21840 overlap by 4 nucleotidesABZR87_RS21840 and ABZR87_RS21845 are separated by 16 nucleotidesABZR87_RS21845 and ABZR87_RS21850 are separated by 102 nucleotides ABZR87_RS21830: ABZR87_RS21830 - SRPBCC family protein, at 1,279,947 to 1,280,909 _RS21830 ABZR87_RS21835: ABZR87_RS21835 - hypothetical protein, at 1,280,899 to 1,281,024 _RS21835 ABZR87_RS21840: ABZR87_RS21840 - DUF4865 family protein, at 1,281,021 to 1,281,587 _RS21840 ABZR87_RS21845: ABZR87_RS21845 - tautomerase family protein, at 1,281,604 to 1,281,996 _RS21845 ABZR87_RS21850: ABZR87_RS21850 - LysR substrate-binding domain-containing protein, at 1,282,099 to 1,282,953 _RS21850 Position (kb) 1281 1282Strain fitness (log2 ratio) -1 0 1at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.703 kb on + strand, within ABZR87_RS21830at 1280.704 kb on - strand, within ABZR87_RS21830at 1280.704 kb on - strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on + strand, within ABZR87_RS21830at 1280.709 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.710 kb on - strand, within ABZR87_RS21830at 1280.835 kb on + strandat 1280.835 kb on + strandat 1280.996 kb on + strand, within ABZR87_RS21835at 1280.996 kb on + strand, within ABZR87_RS21835at 1280.996 kb on + strand, within ABZR87_RS21835at 1280.996 kb on + strand, within ABZR87_RS21835at 1280.997 kb on - strand, within ABZR87_RS21835at 1280.997 kb on - strand, within ABZR87_RS21835at 1281.409 kb on + strand, within ABZR87_RS21840at 1281.409 kb on + strand, within ABZR87_RS21840at 1281.409 kb on + strand, within ABZR87_RS21840at 1281.410 kb on - strand, within ABZR87_RS21840at 1281.547 kb on + strandat 1281.548 kb on - strandat 1281.571 kb on + strandat 1281.571 kb on + strandat 1281.571 kb on + strandat 1281.571 kb on + strandat 1281.572 kb on - strandat 1281.572 kb on - strandat 1281.623 kb on + strandat 1281.624 kb on - strandat 1281.671 kb on - strand, within ABZR87_RS21845at 1281.671 kb on - strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.685 kb on + strand, within ABZR87_RS21845at 1281.686 kb on - strand, within ABZR87_RS21845at 1281.686 kb on - strand, within ABZR87_RS21845at 1281.827 kb on + strand, within ABZR87_RS21845at 1281.827 kb on + strand, within ABZR87_RS21845at 1281.827 kb on + strand, within ABZR87_RS21845at 1281.828 kb on - strand, within ABZR87_RS21845at 1281.923 kb on + strand, within ABZR87_RS21845at 1281.950 kb on + strand, within ABZR87_RS21845at 1281.951 kb on - strand, within ABZR87_RS21845at 1282.744 kb on - strand, within ABZR87_RS21850

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
remove
1,280,703 + ABZR87_RS21830 0.79 -0.0
1,280,703 + ABZR87_RS21830 0.79 +0.3
1,280,703 + ABZR87_RS21830 0.79 +0.1
1,280,704 - ABZR87_RS21830 0.79 -1.6
1,280,704 - ABZR87_RS21830 0.79 +0.8
1,280,709 + ABZR87_RS21830 0.79 -0.3
1,280,709 + ABZR87_RS21830 0.79 -0.5
1,280,709 + ABZR87_RS21830 0.79 +0.9
1,280,709 - ABZR87_RS21830 0.79 +0.0
1,280,710 - ABZR87_RS21830 0.79 -0.8
1,280,710 - ABZR87_RS21830 0.79 +0.0
1,280,710 - ABZR87_RS21830 0.79 +0.2
1,280,710 - ABZR87_RS21830 0.79 -0.0
1,280,835 + -0.8
1,280,835 + -0.8
1,280,996 + ABZR87_RS21835 0.77 -0.8
1,280,996 + ABZR87_RS21835 0.77 -0.3
1,280,996 + ABZR87_RS21835 0.77 +0.3
1,280,996 + ABZR87_RS21835 0.77 -0.6
1,280,997 - ABZR87_RS21835 0.78 +1.6
1,280,997 - ABZR87_RS21835 0.78 -0.3
1,281,409 + ABZR87_RS21840 0.68 +0.7
1,281,409 + ABZR87_RS21840 0.68 -0.5
1,281,409 + ABZR87_RS21840 0.68 +0.1
1,281,410 - ABZR87_RS21840 0.69 -0.4
1,281,547 + +1.4
1,281,548 - -0.8
1,281,571 + -0.1
1,281,571 + +0.3
1,281,571 + +0.3
1,281,571 + -0.0
1,281,572 - -0.4
1,281,572 - -0.9
1,281,623 + +0.2
1,281,624 - -0.1
1,281,671 - ABZR87_RS21845 0.17 -1.6
1,281,671 - ABZR87_RS21845 0.17 -1.5
1,281,685 + ABZR87_RS21845 0.21 -1.3
1,281,685 + ABZR87_RS21845 0.21 -0.5
1,281,685 + ABZR87_RS21845 0.21 -0.0
1,281,685 + ABZR87_RS21845 0.21 +0.6
1,281,685 + ABZR87_RS21845 0.21 -0.3
1,281,685 + ABZR87_RS21845 0.21 -0.2
1,281,685 + ABZR87_RS21845 0.21 -0.2
1,281,685 + ABZR87_RS21845 0.21 -0.2
1,281,685 + ABZR87_RS21845 0.21 +0.2
1,281,686 - ABZR87_RS21845 0.21 -0.0
1,281,686 - ABZR87_RS21845 0.21 -0.2
1,281,827 + ABZR87_RS21845 0.57 +0.1
1,281,827 + ABZR87_RS21845 0.57 -0.6
1,281,827 + ABZR87_RS21845 0.57 -0.7
1,281,828 - ABZR87_RS21845 0.57 -0.5
1,281,923 + ABZR87_RS21845 0.81 +0.3
1,281,950 + ABZR87_RS21845 0.88 +0.6
1,281,951 - ABZR87_RS21845 0.88 -0.3
1,282,744 - ABZR87_RS21850 0.75 +0.1

Or see this region's nucleotide sequence