Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17555

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17550 and ABZR87_RS17555 are separated by 2 nucleotidesABZR87_RS17555 and ABZR87_RS17560 are separated by 150 nucleotides ABZR87_RS17550: ABZR87_RS17550 - MFS transporter, at 299,240 to 300,565 _RS17550 ABZR87_RS17555: ABZR87_RS17555 - amidohydrolase family protein, at 300,568 to 301,500 _RS17555 ABZR87_RS17560: ABZR87_RS17560 - ABC transporter substrate-binding protein, at 301,651 to 302,859 _RS17560 Position (kb) 300 301 302Strain fitness (log2 ratio) -2 -1 0 1 2at 299.582 kb on + strand, within ABZR87_RS17550at 299.582 kb on + strand, within ABZR87_RS17550at 299.583 kb on - strand, within ABZR87_RS17550at 299.583 kb on - strand, within ABZR87_RS17550at 299.642 kb on + strand, within ABZR87_RS17550at 299.643 kb on - strand, within ABZR87_RS17550at 299.722 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.984 kb on + strand, within ABZR87_RS17550at 299.985 kb on - strand, within ABZR87_RS17550at 299.985 kb on - strand, within ABZR87_RS17550at 300.006 kb on + strand, within ABZR87_RS17550at 300.007 kb on - strand, within ABZR87_RS17550at 300.007 kb on - strand, within ABZR87_RS17550at 300.064 kb on + strand, within ABZR87_RS17550at 300.064 kb on + strand, within ABZR87_RS17550at 300.065 kb on - strand, within ABZR87_RS17550at 300.116 kb on + strand, within ABZR87_RS17550at 300.293 kb on + strand, within ABZR87_RS17550at 300.293 kb on + strand, within ABZR87_RS17550at 300.293 kb on + strand, within ABZR87_RS17550at 300.294 kb on - strand, within ABZR87_RS17550at 300.294 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.449 kb on + strandat 300.449 kb on + strandat 300.449 kb on + strandat 300.450 kb on - strandat 300.450 kb on - strandat 300.450 kb on - strandat 300.630 kb on + strandat 300.631 kb on - strandat 300.643 kb on - strandat 300.643 kb on - strandat 300.730 kb on + strand, within ABZR87_RS17555at 300.730 kb on + strand, within ABZR87_RS17555at 300.730 kb on + strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.796 kb on + strand, within ABZR87_RS17555at 300.797 kb on - strand, within ABZR87_RS17555at 300.797 kb on - strand, within ABZR87_RS17555at 300.856 kb on + strand, within ABZR87_RS17555at 300.933 kb on + strand, within ABZR87_RS17555at 300.934 kb on - strand, within ABZR87_RS17555at 301.088 kb on + strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.261 kb on + strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.389 kb on + strand, within ABZR87_RS17555at 301.389 kb on + strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.486 kb on + strandat 301.487 kb on - strandat 301.768 kb on + strandat 301.768 kb on + strandat 301.768 kb on + strandat 301.769 kb on - strandat 302.011 kb on + strand, within ABZR87_RS17560at 302.011 kb on + strand, within ABZR87_RS17560at 302.011 kb on + strand, within ABZR87_RS17560at 302.012 kb on - strand, within ABZR87_RS17560at 302.084 kb on - strand, within ABZR87_RS17560at 302.084 kb on - strand, within ABZR87_RS17560at 302.112 kb on + strand, within ABZR87_RS17560at 302.149 kb on + strand, within ABZR87_RS17560at 302.149 kb on + strand, within ABZR87_RS17560at 302.150 kb on - strand, within ABZR87_RS17560at 302.150 kb on - strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.167 kb on + strand, within ABZR87_RS17560at 302.168 kb on - strand, within ABZR87_RS17560at 302.278 kb on + strand, within ABZR87_RS17560at 302.279 kb on - strand, within ABZR87_RS17560

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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299,582 + ABZR87_RS17550 0.26 -0.6
299,582 + ABZR87_RS17550 0.26 +1.7
299,583 - ABZR87_RS17550 0.26 -0.3
299,583 - ABZR87_RS17550 0.26 -0.1
299,642 + ABZR87_RS17550 0.30 -0.2
299,643 - ABZR87_RS17550 0.30 +0.8
299,722 + ABZR87_RS17550 0.36 -0.0
299,911 + ABZR87_RS17550 0.51 +0.1
299,911 + ABZR87_RS17550 0.51 -0.1
299,911 + ABZR87_RS17550 0.51 +0.6
299,912 - ABZR87_RS17550 0.51 +0.2
299,912 - ABZR87_RS17550 0.51 -1.4
299,912 - ABZR87_RS17550 0.51 +0.3
299,984 + ABZR87_RS17550 0.56 -1.2
299,985 - ABZR87_RS17550 0.56 -0.4
299,985 - ABZR87_RS17550 0.56 +0.4
300,006 + ABZR87_RS17550 0.58 +0.5
300,007 - ABZR87_RS17550 0.58 +0.4
300,007 - ABZR87_RS17550 0.58 +0.3
300,064 + ABZR87_RS17550 0.62 +1.0
300,064 + ABZR87_RS17550 0.62 -1.0
300,065 - ABZR87_RS17550 0.62 +0.3
300,116 + ABZR87_RS17550 0.66 +0.2
300,293 + ABZR87_RS17550 0.79 -0.1
300,293 + ABZR87_RS17550 0.79 +0.0
300,293 + ABZR87_RS17550 0.79 +0.2
300,294 - ABZR87_RS17550 0.79 -2.3
300,294 - ABZR87_RS17550 0.79 -0.1
300,420 - ABZR87_RS17550 0.89 +0.2
300,420 - ABZR87_RS17550 0.89 -0.2
300,420 - ABZR87_RS17550 0.89 -0.8
300,420 - ABZR87_RS17550 0.89 -0.6
300,449 + -0.1
300,449 + +0.3
300,449 + -1.1
300,450 - -0.4
300,450 - +0.1
300,450 - +0.3
300,630 + +0.6
300,631 - -1.0
300,643 - -1.0
300,643 - -0.2
300,730 + ABZR87_RS17555 0.17 +0.0
300,730 + ABZR87_RS17555 0.17 -1.5
300,730 + ABZR87_RS17555 0.17 -0.0
300,731 - ABZR87_RS17555 0.17 +0.8
300,731 - ABZR87_RS17555 0.17 +0.2
300,731 - ABZR87_RS17555 0.17 +0.5
300,796 + ABZR87_RS17555 0.24 +0.1
300,797 - ABZR87_RS17555 0.25 -0.5
300,797 - ABZR87_RS17555 0.25 +0.4
300,856 + ABZR87_RS17555 0.31 +0.5
300,933 + ABZR87_RS17555 0.39 -0.6
300,934 - ABZR87_RS17555 0.39 +0.2
301,088 + ABZR87_RS17555 0.56 +0.0
301,089 - ABZR87_RS17555 0.56 +0.0
301,089 - ABZR87_RS17555 0.56 +0.4
301,089 - ABZR87_RS17555 0.56 -0.2
301,089 - ABZR87_RS17555 0.56 +0.3
301,261 + ABZR87_RS17555 0.74 +0.2
301,262 - ABZR87_RS17555 0.74 +2.4
301,262 - ABZR87_RS17555 0.74 -1.4
301,262 - ABZR87_RS17555 0.74 +0.5
301,262 - ABZR87_RS17555 0.74 -0.7
301,292 - ABZR87_RS17555 0.78 -0.7
301,292 - ABZR87_RS17555 0.78 +0.5
301,292 - ABZR87_RS17555 0.78 -0.3
301,389 + ABZR87_RS17555 0.88 -0.4
301,389 + ABZR87_RS17555 0.88 -0.9
301,390 - ABZR87_RS17555 0.88 -2.1
301,390 - ABZR87_RS17555 0.88 +0.5
301,390 - ABZR87_RS17555 0.88 -0.3
301,390 - ABZR87_RS17555 0.88 +0.2
301,390 - ABZR87_RS17555 0.88 -0.3
301,486 + -1.0
301,487 - +0.6
301,768 + -0.3
301,768 + -0.3
301,768 + +0.5
301,769 - -0.5
302,011 + ABZR87_RS17560 0.30 -0.4
302,011 + ABZR87_RS17560 0.30 -1.1
302,011 + ABZR87_RS17560 0.30 -0.9
302,012 - ABZR87_RS17560 0.30 +2.0
302,084 - ABZR87_RS17560 0.36 -0.7
302,084 - ABZR87_RS17560 0.36 -0.6
302,112 + ABZR87_RS17560 0.38 +1.4
302,149 + ABZR87_RS17560 0.41 -0.3
302,149 + ABZR87_RS17560 0.41 +0.0
302,150 - ABZR87_RS17560 0.41 +0.8
302,150 - ABZR87_RS17560 0.41 -1.3
302,167 + ABZR87_RS17560 0.43 +0.4
302,167 + ABZR87_RS17560 0.43 -1.0
302,167 + ABZR87_RS17560 0.43 -1.0
302,167 + ABZR87_RS17560 0.43 -0.6
302,168 - ABZR87_RS17560 0.43 -1.0
302,278 + ABZR87_RS17560 0.52 -0.6
302,279 - ABZR87_RS17560 0.52 -0.3

Or see this region's nucleotide sequence