Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16265 and ABZR87_RS16270 are separated by 78 nucleotides ABZR87_RS16270 and ABZR87_RS16275 are separated by 415 nucleotides
ABZR87_RS16265: ABZR87_RS16265 - replication protein RepA, at 1 to 1,077
_RS16265
ABZR87_RS16270: ABZR87_RS16270 - cold-shock protein, at 1,156 to 1,359
_RS16270
ABZR87_RS16275: ABZR87_RS16275 - ParA family protein, at 1,775 to 2,443
_RS16275
Position (kb)
1
2 Strain fitness (log2 ratio)
-1
0
1
2 at 1.157 kb on + strand at 1.158 kb on - strand at 1.158 kb on - strand at 1.333 kb on - strand, within ABZR87_RS16270 at 1.348 kb on - strand at 1.445 kb on + strand at 1.445 kb on + strand at 1.470 kb on + strand at 1.471 kb on - strand at 1.471 kb on - strand at 1.471 kb on - strand at 1.534 kb on - strand at 1.534 kb on - strand at 1.548 kb on + strand at 1.549 kb on - strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.556 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.567 kb on + strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.568 kb on - strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.589 kb on + strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.590 kb on - strand at 1.593 kb on + strand at 1.593 kb on + strand at 1.594 kb on - strand at 1.594 kb on - strand at 1.594 kb on - strand at 1.613 kb on + strand at 1.614 kb on - strand at 1.687 kb on - strand at 1.687 kb on - strand at 1.700 kb on + strand at 1.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 1,157 + -0.9 1,158 - -0.4 1,158 - +2.2 1,333 - ABZR87_RS16270 0.87 +0.2 1,348 - +0.9 1,445 + +0.0 1,445 + +0.1 1,470 + -0.1 1,471 - -0.2 1,471 - -0.0 1,471 - -1.3 1,534 - -0.2 1,534 - +0.3 1,548 + -0.4 1,549 - -0.3 1,556 + -0.6 1,556 + -0.0 1,556 + +0.0 1,556 + +1.2 1,567 + +0.2 1,567 + +0.6 1,567 + -0.1 1,567 + -0.3 1,567 + -0.1 1,568 - -0.1 1,568 - -0.9 1,568 - +2.6 1,589 + -0.4 1,589 + +0.6 1,589 + -0.0 1,589 + +0.3 1,589 + +1.1 1,590 - -0.0 1,590 - +0.2 1,590 - -0.4 1,590 - -1.0 1,590 - +0.4 1,590 - -0.4 1,590 - -0.2 1,590 - +0.4 1,590 - -0.2 1,590 - -1.1 1,593 + +0.8 1,593 + +2.1 1,594 - -0.2 1,594 - +1.1 1,594 - -0.3 1,613 + -0.4 1,614 - +0.2 1,687 - -0.2 1,687 - +0.2 1,700 + -0.3 1,701 - -0.1
Or see this region's nucleotide sequence