Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001842

Experiment: R2A with Quartz_sand 500 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Quartz_sand 500 g/L
2,082,342	+		ABIE53_001841	0.23	-1.4
2,082,343	-		ABIE53_001841	0.23	+0.7
2,082,343	-		ABIE53_001841	0.23	+0.8
2,082,421	+		ABIE53_001841	0.30	-0.5
2,082,658	-		ABIE53_001841	0.52	+2.7
2,083,184	+				-1.3
2,083,184	+				-2.4
2,083,184	+				-0.5
2,083,185	-				-0.9
2,083,185	-				-0.7
2,083,580	+		ABIE53_001842	0.21	+2.3
2,083,581	-		ABIE53_001842	0.21	+1.5
2,083,596	-		ABIE53_001842	0.22	-0.9
2,083,630	-		ABIE53_001842	0.24	-2.9
2,083,838	+		ABIE53_001842	0.36	+0.7
2,083,839	-		ABIE53_001842	0.36	-3.3
2,083,910	-		ABIE53_001842	0.40	+0.7
2,084,054	+		ABIE53_001842	0.48	-0.3
2,084,054	+		ABIE53_001842	0.48	-0.3
2,084,237	+		ABIE53_001842	0.58	-1.1
2,084,238	-		ABIE53_001842	0.58	+0.1
2,084,312	+		ABIE53_001842	0.62	-0.5
2,084,312	+		ABIE53_001842	0.62	+0.4
2,084,312	+		ABIE53_001842	0.62	-0.9
2,084,313	-		ABIE53_001842	0.62	+0.0
2,084,500	-		ABIE53_001842	0.73	-0.7
2,084,561	+		ABIE53_001842	0.76	+2.0
2,084,562	-		ABIE53_001842	0.76	-2.4
2,084,928	+				+1.3
2,085,511	+		ABIE53_001843	0.32	+0.1
2,085,512	-		ABIE53_001843	0.33	+0.5
2,085,512	-		ABIE53_001843	0.33	-0.7
2,085,512	-		ABIE53_001843	0.33	+0.9
2,085,772	+		ABIE53_001843	0.49	-0.3