Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02836 and SMc02837 are separated by 17 nucleotides SMc02837 and SMc02838 are separated by 30 nucleotides SMc02838 and SMc02937 are separated by 92 nucleotides SMc02937 and SMc02839 are separated by 58 nucleotides
SMc02836: SMc02836 - ABC transporter ATP-binding protein, at 185,048 to 186,853
SMc02836
SMc02837: SMc02837 - dihydrodipicolinate reductase, at 186,871 to 187,689
SMc02837
SMc02838: SMc02838 - phosphoglyceromutase, at 187,720 to 188,355
SMc02838
SMc02937: SMc02937 - partial transposase for insertion sequence element ISRM5, at 188,448 to 188,747
SMc02937
SMc02839: SMc02839 - transposase ISRM3, at 188,806 to 190,008
SMc02839
Position (kb) 187
188
189 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 187.912 kb on - strand, within SMc02838 at 187.990 kb on + strand, within SMc02838 at 188.055 kb on + strand, within SMc02838 at 188.056 kb on - strand, within SMc02838 at 188.056 kb on - strand, within SMc02838 at 188.135 kb on - strand, within SMc02838 at 188.337 kb on + strand at 188.337 kb on + strand at 188.388 kb on + strand at 188.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 187,912 - SMc02838 0.30 -3.8 187,990 + SMc02838 0.42 -4.4 188,055 + SMc02838 0.53 -5.2 188,056 - SMc02838 0.53 -4.0 188,056 - SMc02838 0.53 -4.9 188,135 - SMc02838 0.65 -5.3 188,337 + +0.6 188,337 + -0.0 188,388 + +0.7 188,405 - +0.1
Or see this region's nucleotide sequence