Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02600 and SMc02602 are separated by 281 nucleotides SMc02602 and SMc02604 are separated by 93 nucleotides SMc02604 and SMc02605 are separated by 22 nucleotides SMc02605 and SMc02606 overlap by 8 nucleotides
SMc02600: SMc02600 - hypothetical protein, at 94,619 to 95,767
SMc02600
SMc02602: SMc02602 - hypothetical protein, at 96,049 to 96,345
SMc02602
SMc02604: SMc02604 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase, at 96,439 to 97,359
SMc02604
SMc02605: SMc02605 - sarcosine oxidase subunit gamma, at 97,382 to 97,915
SMc02605
SMc02606: SMc02606 - sarcosine oxidase subunit alpha, at 97,908 to 100,871
SMc02606
Position (kb) 96
97
98 Strain fitness (log2 ratio) -1
0
1
2 at 95.454 kb on + strand, within SMc02600 at 95.454 kb on + strand, within SMc02600 at 95.455 kb on - strand, within SMc02600 at 95.455 kb on - strand, within SMc02600 at 95.806 kb on + strand at 95.806 kb on + strand at 95.806 kb on + strand at 95.806 kb on + strand at 95.806 kb on + strand at 95.806 kb on + strand at 95.806 kb on + strand at 95.807 kb on - strand at 95.807 kb on - strand at 95.807 kb on - strand at 95.814 kb on + strand at 95.816 kb on + strand at 95.955 kb on + strand at 95.956 kb on - strand at 95.972 kb on - strand at 96.018 kb on + strand at 96.018 kb on + strand at 96.142 kb on + strand, within SMc02602 at 96.143 kb on - strand, within SMc02602 at 96.208 kb on + strand, within SMc02602 at 96.208 kb on + strand, within SMc02602 at 96.208 kb on + strand, within SMc02602 at 96.208 kb on + strand, within SMc02602 at 96.209 kb on - strand at 96.209 kb on - strand, within SMc02602 at 96.209 kb on - strand, within SMc02602 at 96.209 kb on - strand, within SMc02602 at 96.337 kb on + strand at 96.337 kb on + strand at 96.343 kb on + strand at 96.397 kb on - strand at 96.564 kb on + strand, within SMc02604 at 96.565 kb on - strand, within SMc02604 at 96.565 kb on - strand, within SMc02604 at 96.565 kb on - strand, within SMc02604 at 96.668 kb on + strand, within SMc02604 at 97.214 kb on + strand, within SMc02604 at 97.214 kb on + strand, within SMc02604 at 97.215 kb on - strand, within SMc02604 at 98.092 kb on + strand at 98.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 95,454 + SMc02600 0.73 +0.1 95,454 + SMc02600 0.73 +0.2 95,455 - SMc02600 0.73 +0.4 95,455 - SMc02600 0.73 -0.2 95,806 + +1.2 95,806 + -0.5 95,806 + +0.6 95,806 + -0.1 95,806 + -1.2 95,806 + -0.2 95,806 + -0.1 95,807 - -0.2 95,807 - +0.1 95,807 - -1.0 95,814 + +0.8 95,816 + +0.0 95,955 + +0.5 95,956 - +1.0 95,972 - -0.2 96,018 + -0.0 96,018 + -0.4 96,142 + SMc02602 0.31 -0.3 96,143 - SMc02602 0.32 +1.9 96,208 + SMc02602 0.54 +0.3 96,208 + SMc02602 0.54 +1.5 96,208 + SMc02602 0.54 -0.4 96,208 + SMc02602 0.54 -1.0 96,209 - +1.0 96,209 - SMc02602 0.54 +0.6 96,209 - SMc02602 0.54 -1.0 96,209 - SMc02602 0.54 +0.2 96,337 + -1.1 96,337 + -0.6 96,343 + -0.0 96,397 - +0.2 96,564 + SMc02604 0.14 -0.4 96,565 - SMc02604 0.14 -0.4 96,565 - SMc02604 0.14 -0.6 96,565 - SMc02604 0.14 +0.6 96,668 + SMc02604 0.25 +0.1 97,214 + SMc02604 0.84 +0.4 97,214 + SMc02604 0.84 +0.6 97,215 - SMc02604 0.84 +0.6 98,092 + -0.1 98,093 - +0.3
Or see this region's nucleotide sequence