Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02578 and SMc02579 are separated by 151 nucleotides SMc02579 and SMc02580 are separated by 130 nucleotides
SMc02578: SMc02578 - hypothetical protein, at 64,116 to 65,066
SMc02578
SMc02579: SMc02579 - cytochrome P450 monooxygenase, at 65,218 to 66,618
SMc02579
SMc02580: SMc02580 - hypothetical protein, at 66,749 to 68,755
SMc02580
Position (kb) 65
66
67 Strain fitness (log2 ratio) -2
-1
0
1 at 64.838 kb on + strand, within SMc02578 at 65.204 kb on - strand at 65.341 kb on + strand at 65.341 kb on + strand at 65.389 kb on - strand, within SMc02579 at 65.417 kb on - strand, within SMc02579 at 65.444 kb on - strand, within SMc02579 at 66.009 kb on + strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.071 kb on - strand, within SMc02579 at 66.212 kb on - strand, within SMc02579 at 66.347 kb on - strand, within SMc02579 at 66.407 kb on + strand, within SMc02579 at 66.408 kb on - strand, within SMc02579 at 66.408 kb on - strand, within SMc02579 at 66.616 kb on + strand at 66.616 kb on + strand at 66.616 kb on + strand at 66.617 kb on - strand at 66.637 kb on - strand at 66.692 kb on + strand at 66.692 kb on + strand at 66.699 kb on + strand at 66.700 kb on - strand at 66.700 kb on - strand at 66.700 kb on - strand at 66.791 kb on + strand at 66.791 kb on + strand at 66.791 kb on + strand at 66.792 kb on - strand at 66.793 kb on + strand at 67.197 kb on - strand, within SMc02580
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 64,838 + SMc02578 0.76 +1.6 65,204 - -1.5 65,341 + -0.3 65,341 + -0.6 65,389 - SMc02579 0.12 +1.0 65,417 - SMc02579 0.14 -0.2 65,444 - SMc02579 0.16 -0.2 66,009 + SMc02579 0.56 -0.2 66,010 - SMc02579 0.57 +0.1 66,010 - SMc02579 0.57 +0.6 66,010 - SMc02579 0.57 +1.0 66,010 - SMc02579 0.57 +1.4 66,071 - SMc02579 0.61 -0.1 66,212 - SMc02579 0.71 -0.2 66,347 - SMc02579 0.81 +1.1 66,407 + SMc02579 0.85 +1.1 66,408 - SMc02579 0.85 -1.0 66,408 - SMc02579 0.85 +0.7 66,616 + +0.1 66,616 + +0.4 66,616 + -0.1 66,617 - -0.8 66,637 - +0.9 66,692 + +0.7 66,692 + +0.3 66,699 + +0.3 66,700 - +0.3 66,700 - -0.9 66,700 - -0.3 66,791 + -2.1 66,791 + -0.3 66,791 + -0.4 66,792 - -0.1 66,793 + +0.3 67,197 - SMc02580 0.22 -1.0
Or see this region's nucleotide sequence