Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02227 and SMc02228 are separated by 21 nucleotides SMc02228 and SMc02229 are separated by 105 nucleotides
SMc02227: SMc02227 - fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase, at 587,900 to 590,113
SMc02227
SMc02228: SMc02228 - acetyl-CoA acetyltransferase, at 590,135 to 591,343
SMc02228
SMc02229: SMc02229 - acyl-CoA dehydrogenase, at 591,449 to 593,245
SMc02229
Position (kb) 590
591
592 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 589.151 kb on + strand, within SMc02227 at 589.178 kb on - strand, within SMc02227 at 589.339 kb on - strand, within SMc02227 at 589.339 kb on - strand, within SMc02227 at 590.113 kb on + strand at 590.114 kb on - strand at 590.114 kb on - strand at 590.308 kb on + strand, within SMc02228 at 590.309 kb on - strand, within SMc02228 at 590.598 kb on + strand, within SMc02228 at 590.598 kb on + strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.722 kb on + strand, within SMc02228 at 590.723 kb on - strand, within SMc02228 at 590.723 kb on - strand, within SMc02228 at 590.723 kb on - strand, within SMc02228 at 590.790 kb on + strand, within SMc02228 at 590.869 kb on - strand at 591.324 kb on + strand at 591.576 kb on + strand at 591.576 kb on + strand at 591.577 kb on - strand at 591.643 kb on + strand, within SMc02229 at 591.643 kb on + strand, within SMc02229 at 591.643 kb on + strand, within SMc02229 at 591.643 kb on + strand, within SMc02229 at 591.644 kb on - strand, within SMc02229 at 591.644 kb on - strand, within SMc02229 at 591.646 kb on - strand, within SMc02229 at 591.676 kb on + strand, within SMc02229 at 591.676 kb on + strand, within SMc02229 at 591.676 kb on + strand, within SMc02229 at 591.677 kb on - strand, within SMc02229 at 591.677 kb on - strand, within SMc02229 at 591.678 kb on + strand, within SMc02229 at 591.678 kb on + strand, within SMc02229 at 591.678 kb on + strand, within SMc02229 at 591.678 kb on + strand, within SMc02229 at 591.686 kb on - strand, within SMc02229 at 591.927 kb on + strand, within SMc02229 at 591.928 kb on - strand, within SMc02229 at 592.314 kb on + strand, within SMc02229
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 589,151 + SMc02227 0.57 -2.8 589,178 - SMc02227 0.58 -1.9 589,339 - SMc02227 0.65 -1.0 589,339 - SMc02227 0.65 -2.5 590,113 + -1.7 590,114 - -0.8 590,114 - -1.7 590,308 + SMc02228 0.14 -0.9 590,309 - SMc02228 0.14 -1.7 590,598 + SMc02228 0.38 -2.6 590,598 + SMc02228 0.38 -1.8 590,599 - SMc02228 0.38 -1.8 590,599 - SMc02228 0.38 -3.8 590,599 - SMc02228 0.38 -2.6 590,599 - SMc02228 0.38 -2.1 590,599 - SMc02228 0.38 -0.6 590,722 + SMc02228 0.49 -3.1 590,723 - SMc02228 0.49 -4.1 590,723 - SMc02228 0.49 -2.1 590,723 - SMc02228 0.49 -3.4 590,790 + SMc02228 0.54 -0.9 590,869 - -0.6 591,324 + -3.0 591,576 + -1.1 591,576 + -1.7 591,577 - -3.0 591,643 + SMc02229 0.11 -2.5 591,643 + SMc02229 0.11 -0.1 591,643 + SMc02229 0.11 -1.6 591,643 + SMc02229 0.11 -1.4 591,644 - SMc02229 0.11 -1.5 591,644 - SMc02229 0.11 -2.7 591,646 - SMc02229 0.11 -1.1 591,676 + SMc02229 0.13 -2.1 591,676 + SMc02229 0.13 -0.6 591,676 + SMc02229 0.13 -2.5 591,677 - SMc02229 0.13 -0.9 591,677 - SMc02229 0.13 -1.0 591,678 + SMc02229 0.13 -0.5 591,678 + SMc02229 0.13 -1.9 591,678 + SMc02229 0.13 -1.7 591,678 + SMc02229 0.13 -1.7 591,686 - SMc02229 0.13 -2.7 591,927 + SMc02229 0.27 -1.8 591,928 - SMc02229 0.27 -1.5 592,314 + SMc02229 0.48 -1.7
Or see this region's nucleotide sequence