Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02225 and SMc02226 are separated by 124 nucleotides SMc02226 and SMc02227 are separated by 90 nucleotides SMc02227 and SMc02228 are separated by 21 nucleotides
SMc02225: SMc02225 - hypothetical protein, at 586,684 to 587,211
SMc02225
SMc02226: SMc02226 - hypothetical protein, at 587,336 to 587,809
SMc02226
SMc02227: SMc02227 - fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase, at 587,900 to 590,113
SMc02227
SMc02228: SMc02228 - acetyl-CoA acetyltransferase, at 590,135 to 591,343
SMc02228
Position (kb) 587
588
589
590
591 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 586.971 kb on + strand, within SMc02225 at 586.972 kb on - strand, within SMc02225 at 586.973 kb on + strand, within SMc02225 at 586.973 kb on + strand, within SMc02225 at 586.974 kb on - strand, within SMc02225 at 587.227 kb on - strand at 587.482 kb on + strand, within SMc02226 at 587.483 kb on - strand, within SMc02226 at 587.547 kb on - strand, within SMc02226 at 587.547 kb on - strand, within SMc02226 at 587.564 kb on + strand, within SMc02226 at 587.603 kb on + strand, within SMc02226 at 587.603 kb on + strand, within SMc02226 at 587.604 kb on - strand, within SMc02226 at 587.605 kb on + strand, within SMc02226 at 587.944 kb on - strand at 587.944 kb on - strand at 588.066 kb on + strand at 588.066 kb on + strand at 588.067 kb on - strand at 588.067 kb on - strand at 588.543 kb on + strand, within SMc02227 at 588.543 kb on + strand, within SMc02227 at 588.556 kb on + strand, within SMc02227 at 588.557 kb on - strand, within SMc02227 at 588.559 kb on - strand, within SMc02227 at 588.559 kb on - strand, within SMc02227 at 588.916 kb on - strand, within SMc02227 at 589.086 kb on + strand, within SMc02227 at 589.151 kb on + strand, within SMc02227 at 589.178 kb on - strand, within SMc02227 at 589.339 kb on - strand, within SMc02227 at 589.339 kb on - strand, within SMc02227 at 590.113 kb on + strand at 590.114 kb on - strand at 590.114 kb on - strand at 590.308 kb on + strand, within SMc02228 at 590.309 kb on - strand, within SMc02228 at 590.598 kb on + strand, within SMc02228 at 590.598 kb on + strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.599 kb on - strand, within SMc02228 at 590.722 kb on + strand, within SMc02228 at 590.723 kb on - strand, within SMc02228 at 590.723 kb on - strand, within SMc02228 at 590.723 kb on - strand, within SMc02228 at 590.790 kb on + strand, within SMc02228 at 590.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 586,971 + SMc02225 0.54 -0.8 586,972 - SMc02225 0.55 -0.8 586,973 + SMc02225 0.55 +2.4 586,973 + SMc02225 0.55 -1.7 586,974 - SMc02225 0.55 -0.7 587,227 - -0.1 587,482 + SMc02226 0.31 +0.1 587,483 - SMc02226 0.31 +3.4 587,547 - SMc02226 0.45 +0.9 587,547 - SMc02226 0.45 -0.2 587,564 + SMc02226 0.48 +0.5 587,603 + SMc02226 0.56 +0.1 587,603 + SMc02226 0.56 +0.3 587,604 - SMc02226 0.57 +0.4 587,605 + SMc02226 0.57 -0.9 587,944 - +0.0 587,944 - -0.8 588,066 + -2.5 588,066 + -2.6 588,067 - -0.6 588,067 - -1.7 588,543 + SMc02227 0.29 -0.1 588,543 + SMc02227 0.29 +0.4 588,556 + SMc02227 0.30 +1.4 588,557 - SMc02227 0.30 -1.7 588,559 - SMc02227 0.30 -0.6 588,559 - SMc02227 0.30 -1.7 588,916 - SMc02227 0.46 -2.5 589,086 + SMc02227 0.54 -1.8 589,151 + SMc02227 0.57 -2.8 589,178 - SMc02227 0.58 -1.9 589,339 - SMc02227 0.65 -1.0 589,339 - SMc02227 0.65 -2.5 590,113 + -1.7 590,114 - -0.8 590,114 - -1.7 590,308 + SMc02228 0.14 -0.9 590,309 - SMc02228 0.14 -1.7 590,598 + SMc02228 0.38 -2.6 590,598 + SMc02228 0.38 -1.8 590,599 - SMc02228 0.38 -1.8 590,599 - SMc02228 0.38 -3.8 590,599 - SMc02228 0.38 -2.6 590,599 - SMc02228 0.38 -2.1 590,599 - SMc02228 0.38 -0.6 590,722 + SMc02228 0.49 -3.1 590,723 - SMc02228 0.49 -4.1 590,723 - SMc02228 0.49 -2.1 590,723 - SMc02228 0.49 -3.4 590,790 + SMc02228 0.54 -0.9 590,869 - -0.6
Or see this region's nucleotide sequence