Strain Fitness in Sinorhizobium meliloti 1021 around SMc01858

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01860 and SMc01859 overlap by 1 nucleotidesSMc01859 and SMc01858 are separated by 6 nucleotidesSMc01858 and SMc01857 are separated by 14 nucleotides SMc01860: SMc01860 - penicillin-binding transmembrane protein, at 2,352,736 to 2,354,484 SMc01860 SMc01859: SMc01859 - hypothetical protein, at 2,354,484 to 2,354,879 SMc01859 SMc01858: SMc01858 - S-adenosyl-methyltransferase MraW, at 2,354,886 to 2,355,911 SMc01858 SMc01857: SMc01857 - cell division protein MraZ, at 2,355,926 to 2,356,366 SMc01857 Position (kb) 2354 2355 2356Strain fitness (log2 ratio) -1 0 1at 2355.042 kb on - strand, within SMc01858at 2355.928 kb on - strandat 2355.928 kb on - strandat 2356.114 kb on - strand, within SMc01857at 2356.114 kb on - strand, within SMc01857at 2356.258 kb on - strand, within SMc01857at 2356.343 kb on - strandat 2356.611 kb on - strandat 2356.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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2,355,042 - SMc01858 0.15 -0.8
2,355,928 - +1.1
2,355,928 - +0.2
2,356,114 - SMc01857 0.43 -0.0
2,356,114 - SMc01857 0.43 -1.1
2,356,258 - SMc01857 0.75 -0.1
2,356,343 - +0.7
2,356,611 - -0.2
2,356,655 + +0.1

Or see this region's nucleotide sequence