Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00433 and SMc01166 are separated by 171 nucleotides SMc01166 and SMc01165 are separated by 49 nucleotides
SMc00433: SMc00433 - Myo-inosose-2 dehydratase (EC 4.2.1.44) <small>(from data)</small>, at 380,875 to 381,777
SMc00433
SMc01166: SMc01166 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 381,949 to 383,802
SMc01166
SMc01165: SMc01165 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) <small>(from data)</small>, at 383,852 to 385,804
SMc01165
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 381.000 kb on - strand, within SMc00433 at 381.177 kb on + strand, within SMc00433 at 381.180 kb on - strand, within SMc00433 at 381.180 kb on - strand, within SMc00433 at 381.180 kb on - strand, within SMc00433 at 381.600 kb on - strand, within SMc00433 at 381.600 kb on - strand, within SMc00433 at 381.600 kb on - strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.799 kb on + strand at 381.799 kb on + strand at 381.901 kb on - strand at 381.912 kb on - strand at 382.379 kb on + strand, within SMc01166 at 382.379 kb on + strand, within SMc01166 at 382.379 kb on + strand, within SMc01166 at 382.380 kb on - strand, within SMc01166 at 382.380 kb on - strand, within SMc01166 at 382.380 kb on - strand, within SMc01166 at 382.380 kb on - strand, within SMc01166 at 382.380 kb on - strand, within SMc01166 at 382.457 kb on + strand, within SMc01166 at 382.458 kb on - strand, within SMc01166 at 382.718 kb on + strand, within SMc01166 at 382.719 kb on - strand, within SMc01166 at 383.072 kb on + strand, within SMc01166 at 383.073 kb on - strand, within SMc01166 at 383.207 kb on + strand, within SMc01166 at 383.208 kb on - strand, within SMc01166 at 383.213 kb on + strand, within SMc01166 at 383.214 kb on - strand, within SMc01166 at 383.619 kb on - strand at 384.057 kb on + strand, within SMc01165 at 384.058 kb on - strand, within SMc01165 at 384.058 kb on - strand, within SMc01165 at 384.058 kb on - strand, within SMc01165 at 384.195 kb on + strand, within SMc01165 at 384.195 kb on + strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.360 kb on + strand, within SMc01165 at 384.360 kb on + strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.381 kb on + strand, within SMc01165 at 384.507 kb on + strand, within SMc01165 at 384.508 kb on - strand, within SMc01165 at 384.508 kb on - strand, within SMc01165 at 384.508 kb on - strand, within SMc01165 at 384.525 kb on + strand, within SMc01165 at 384.525 kb on + strand, within SMc01165 at 384.526 kb on - strand, within SMc01165 at 384.786 kb on + strand, within SMc01165 at 384.787 kb on - strand, within SMc01165
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 381,000 - SMc00433 0.14 -0.5 381,177 + SMc00433 0.33 +0.4 381,180 - SMc00433 0.34 -0.3 381,180 - SMc00433 0.34 -1.4 381,180 - SMc00433 0.34 +1.5 381,600 - SMc00433 0.80 -0.4 381,600 - SMc00433 0.80 -0.6 381,600 - SMc00433 0.80 +0.1 381,645 + SMc00433 0.85 +0.5 381,645 + SMc00433 0.85 -0.5 381,645 + SMc00433 0.85 +0.2 381,645 + SMc00433 0.85 +0.1 381,645 + SMc00433 0.85 +0.2 381,645 + SMc00433 0.85 -0.1 381,646 - SMc00433 0.85 +0.1 381,646 - SMc00433 0.85 -0.1 381,646 - SMc00433 0.85 -0.0 381,646 - SMc00433 0.85 +1.5 381,646 - SMc00433 0.85 +0.5 381,646 - SMc00433 0.85 -0.3 381,799 + -0.5 381,799 + -0.1 381,901 - -0.2 381,912 - +0.1 382,379 + SMc01166 0.23 +0.5 382,379 + SMc01166 0.23 -0.8 382,379 + SMc01166 0.23 +0.5 382,380 - SMc01166 0.23 -3.4 382,380 - SMc01166 0.23 -0.1 382,380 - SMc01166 0.23 -0.1 382,380 - SMc01166 0.23 -0.1 382,380 - SMc01166 0.23 -0.8 382,457 + SMc01166 0.27 +0.5 382,458 - SMc01166 0.27 -0.6 382,718 + SMc01166 0.41 +2.2 382,719 - SMc01166 0.42 +0.8 383,072 + SMc01166 0.61 +0.4 383,073 - SMc01166 0.61 -0.9 383,207 + SMc01166 0.68 +0.1 383,208 - SMc01166 0.68 -0.1 383,213 + SMc01166 0.68 +0.5 383,214 - SMc01166 0.68 -0.1 383,619 - +0.2 384,057 + SMc01165 0.10 -0.7 384,058 - SMc01165 0.11 +0.3 384,058 - SMc01165 0.11 +0.7 384,058 - SMc01165 0.11 -1.8 384,195 + SMc01165 0.18 -0.6 384,195 + SMc01165 0.18 -0.2 384,196 - SMc01165 0.18 +0.9 384,196 - SMc01165 0.18 +0.2 384,196 - SMc01165 0.18 -0.1 384,196 - SMc01165 0.18 -0.3 384,360 + SMc01165 0.26 -0.3 384,360 + SMc01165 0.26 +0.3 384,361 - SMc01165 0.26 +0.3 384,361 - SMc01165 0.26 +0.0 384,361 - SMc01165 0.26 +0.8 384,361 - SMc01165 0.26 -0.6 384,361 - SMc01165 0.26 -0.7 384,381 + SMc01165 0.27 +0.7 384,507 + SMc01165 0.34 +0.4 384,508 - SMc01165 0.34 +0.1 384,508 - SMc01165 0.34 +0.5 384,508 - SMc01165 0.34 -0.7 384,525 + SMc01165 0.34 -0.0 384,525 + SMc01165 0.34 +1.1 384,526 - SMc01165 0.35 +0.9 384,786 + SMc01165 0.48 +0.5 384,787 - SMc01165 0.48 -0.2
Or see this region's nucleotide sequence