Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01166 and SMc01165 are separated by 49 nucleotides SMc01165 and SMc01164 are separated by 119 nucleotides
SMc01166: SMc01166 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 381,949 to 383,802
SMc01166
SMc01165: SMc01165 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) <small>(from data)</small>, at 383,852 to 385,804
SMc01165
SMc01164: SMc01164 - hypothetical protein, at 385,924 to 386,778
SMc01164
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -2
-1
0
1
2 at 383.072 kb on + strand, within SMc01166 at 383.073 kb on - strand, within SMc01166 at 383.207 kb on + strand, within SMc01166 at 383.208 kb on - strand, within SMc01166 at 383.213 kb on + strand, within SMc01166 at 383.214 kb on - strand, within SMc01166 at 383.619 kb on - strand at 384.057 kb on + strand, within SMc01165 at 384.058 kb on - strand, within SMc01165 at 384.058 kb on - strand, within SMc01165 at 384.058 kb on - strand, within SMc01165 at 384.195 kb on + strand, within SMc01165 at 384.195 kb on + strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.196 kb on - strand, within SMc01165 at 384.360 kb on + strand, within SMc01165 at 384.360 kb on + strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.361 kb on - strand, within SMc01165 at 384.381 kb on + strand, within SMc01165 at 384.507 kb on + strand, within SMc01165 at 384.508 kb on - strand, within SMc01165 at 384.508 kb on - strand, within SMc01165 at 384.508 kb on - strand, within SMc01165 at 384.525 kb on + strand, within SMc01165 at 384.525 kb on + strand, within SMc01165 at 384.526 kb on - strand, within SMc01165 at 384.786 kb on + strand, within SMc01165 at 384.787 kb on - strand, within SMc01165 at 384.949 kb on + strand, within SMc01165 at 384.949 kb on + strand, within SMc01165 at 384.949 kb on + strand, within SMc01165 at 384.951 kb on + strand, within SMc01165 at 384.951 kb on + strand, within SMc01165 at 384.983 kb on - strand, within SMc01165 at 385.017 kb on + strand, within SMc01165 at 385.017 kb on + strand, within SMc01165 at 385.018 kb on - strand, within SMc01165 at 385.018 kb on - strand, within SMc01165 at 385.018 kb on - strand, within SMc01165 at 385.207 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.245 kb on - strand, within SMc01165 at 385.249 kb on + strand, within SMc01165 at 385.399 kb on + strand, within SMc01165 at 385.400 kb on - strand, within SMc01165 at 385.441 kb on - strand, within SMc01165 at 385.598 kb on + strand, within SMc01165 at 385.843 kb on + strand at 385.843 kb on + strand at 385.843 kb on + strand at 385.849 kb on + strand at 385.850 kb on - strand at 385.850 kb on - strand at 386.105 kb on - strand, within SMc01164 at 386.154 kb on - strand, within SMc01164 at 386.168 kb on - strand, within SMc01164 at 386.273 kb on + strand, within SMc01164 at 386.274 kb on - strand, within SMc01164 at 386.280 kb on + strand, within SMc01164 at 386.281 kb on - strand, within SMc01164 at 386.281 kb on - strand, within SMc01164 at 386.282 kb on + strand, within SMc01164 at 386.283 kb on - strand, within SMc01164 at 386.283 kb on - strand, within SMc01164 at 386.297 kb on + strand, within SMc01164 at 386.321 kb on + strand, within SMc01164 at 386.322 kb on - strand, within SMc01164 at 386.392 kb on - strand, within SMc01164
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 383,072 + SMc01166 0.61 +0.4 383,073 - SMc01166 0.61 -0.9 383,207 + SMc01166 0.68 +0.1 383,208 - SMc01166 0.68 -0.1 383,213 + SMc01166 0.68 +0.5 383,214 - SMc01166 0.68 -0.1 383,619 - +0.2 384,057 + SMc01165 0.10 -0.7 384,058 - SMc01165 0.11 +0.3 384,058 - SMc01165 0.11 +0.7 384,058 - SMc01165 0.11 -1.8 384,195 + SMc01165 0.18 -0.6 384,195 + SMc01165 0.18 -0.2 384,196 - SMc01165 0.18 +0.9 384,196 - SMc01165 0.18 +0.2 384,196 - SMc01165 0.18 -0.1 384,196 - SMc01165 0.18 -0.3 384,360 + SMc01165 0.26 -0.3 384,360 + SMc01165 0.26 +0.3 384,361 - SMc01165 0.26 +0.3 384,361 - SMc01165 0.26 +0.0 384,361 - SMc01165 0.26 +0.8 384,361 - SMc01165 0.26 -0.6 384,361 - SMc01165 0.26 -0.7 384,381 + SMc01165 0.27 +0.7 384,507 + SMc01165 0.34 +0.4 384,508 - SMc01165 0.34 +0.1 384,508 - SMc01165 0.34 +0.5 384,508 - SMc01165 0.34 -0.7 384,525 + SMc01165 0.34 -0.0 384,525 + SMc01165 0.34 +1.1 384,526 - SMc01165 0.35 +0.9 384,786 + SMc01165 0.48 +0.5 384,787 - SMc01165 0.48 -0.2 384,949 + SMc01165 0.56 +0.3 384,949 + SMc01165 0.56 +0.4 384,949 + SMc01165 0.56 -0.0 384,951 + SMc01165 0.56 -0.2 384,951 + SMc01165 0.56 +0.1 384,983 - SMc01165 0.58 +0.1 385,017 + SMc01165 0.60 -0.7 385,017 + SMc01165 0.60 -0.1 385,018 - SMc01165 0.60 +0.3 385,018 - SMc01165 0.60 +0.5 385,018 - SMc01165 0.60 +0.3 385,207 - SMc01165 0.69 +0.3 385,245 - SMc01165 0.71 +0.3 385,245 - SMc01165 0.71 -1.8 385,245 - SMc01165 0.71 +0.0 385,245 - SMc01165 0.71 +0.0 385,249 + SMc01165 0.72 +0.8 385,399 + SMc01165 0.79 -0.2 385,400 - SMc01165 0.79 -0.1 385,441 - SMc01165 0.81 -0.7 385,598 + SMc01165 0.89 -0.3 385,843 + -0.1 385,843 + +1.8 385,843 + +1.0 385,849 + -0.3 385,850 - -0.1 385,850 - +0.5 386,105 - SMc01164 0.21 -1.0 386,154 - SMc01164 0.27 +1.5 386,168 - SMc01164 0.29 -1.2 386,273 + SMc01164 0.41 -0.1 386,274 - SMc01164 0.41 -1.9 386,280 + SMc01164 0.42 -0.5 386,281 - SMc01164 0.42 -2.0 386,281 - SMc01164 0.42 -0.7 386,282 + SMc01164 0.42 -1.4 386,283 - SMc01164 0.42 -1.8 386,283 - SMc01164 0.42 +0.0 386,297 + SMc01164 0.44 -1.3 386,321 + SMc01164 0.46 -0.1 386,322 - SMc01164 0.47 -2.0 386,392 - SMc01164 0.55 -0.5
Or see this region's nucleotide sequence