Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01164 and SMc01163 are separated by 309 nucleotides SMc01163 and SMc01162 are separated by 251 nucleotides
SMc01164: SMc01164 - hypothetical protein, at 385,924 to 386,778
SMc01164
SMc01163: SMc01163 - oxidoreductase, at 387,088 to 388,218
SMc01163
SMc01162: SMc01162 - hypothetical protein, at 388,470 to 389,285
SMc01162
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 386.105 kb on - strand, within SMc01164 at 386.154 kb on - strand, within SMc01164 at 386.168 kb on - strand, within SMc01164 at 386.273 kb on + strand, within SMc01164 at 386.274 kb on - strand, within SMc01164 at 386.280 kb on + strand, within SMc01164 at 386.281 kb on - strand, within SMc01164 at 386.281 kb on - strand, within SMc01164 at 386.282 kb on + strand, within SMc01164 at 386.283 kb on - strand, within SMc01164 at 386.283 kb on - strand, within SMc01164 at 386.297 kb on + strand, within SMc01164 at 386.321 kb on + strand, within SMc01164 at 386.322 kb on - strand, within SMc01164 at 386.392 kb on - strand, within SMc01164 at 386.828 kb on + strand at 387.128 kb on + strand at 387.128 kb on + strand at 387.129 kb on - strand at 387.129 kb on - strand at 387.129 kb on - strand at 387.129 kb on - strand at 387.350 kb on + strand, within SMc01163 at 387.351 kb on - strand at 387.750 kb on + strand, within SMc01163 at 387.752 kb on - strand, within SMc01163 at 387.816 kb on - strand, within SMc01163 at 387.912 kb on - strand, within SMc01163 at 387.912 kb on - strand, within SMc01163 at 388.356 kb on - strand at 388.356 kb on - strand at 388.441 kb on - strand at 388.441 kb on - strand at 388.489 kb on - strand at 388.506 kb on + strand at 388.606 kb on + strand, within SMc01162 at 388.614 kb on + strand, within SMc01162 at 388.615 kb on - strand, within SMc01162 at 388.802 kb on + strand, within SMc01162 at 389.068 kb on - strand, within SMc01162 at 389.097 kb on + strand, within SMc01162 at 389.097 kb on + strand, within SMc01162 at 389.098 kb on - strand, within SMc01162 at 389.128 kb on - strand, within SMc01162
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 386,105 - SMc01164 0.21 -1.0 386,154 - SMc01164 0.27 +1.5 386,168 - SMc01164 0.29 -1.2 386,273 + SMc01164 0.41 -0.1 386,274 - SMc01164 0.41 -1.9 386,280 + SMc01164 0.42 -0.5 386,281 - SMc01164 0.42 -2.0 386,281 - SMc01164 0.42 -0.7 386,282 + SMc01164 0.42 -1.4 386,283 - SMc01164 0.42 -1.8 386,283 - SMc01164 0.42 +0.0 386,297 + SMc01164 0.44 -1.3 386,321 + SMc01164 0.46 -0.1 386,322 - SMc01164 0.47 -2.0 386,392 - SMc01164 0.55 -0.5 386,828 + +0.1 387,128 + +0.0 387,128 + +1.1 387,129 - -0.5 387,129 - +0.5 387,129 - -0.7 387,129 - -1.3 387,350 + SMc01163 0.23 -0.8 387,351 - +0.2 387,750 + SMc01163 0.59 +1.1 387,752 - SMc01163 0.59 -0.1 387,816 - SMc01163 0.64 +0.0 387,912 - SMc01163 0.73 +0.1 387,912 - SMc01163 0.73 -0.4 388,356 - -0.1 388,356 - +0.6 388,441 - -0.0 388,441 - +0.5 388,489 - -3.0 388,506 + +0.2 388,606 + SMc01162 0.17 -0.1 388,614 + SMc01162 0.18 +0.2 388,615 - SMc01162 0.18 +0.4 388,802 + SMc01162 0.41 +0.4 389,068 - SMc01162 0.73 +0.6 389,097 + SMc01162 0.77 +0.4 389,097 + SMc01162 0.77 -0.1 389,098 - SMc01162 0.77 +0.4 389,128 - SMc01162 0.81 +0.2
Or see this region's nucleotide sequence