Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00978 and SMc00977 are separated by 177 nucleotides SMc00977 and SMc00976 are separated by 9 nucleotides
SMc00978: SMc00978 - hypothetical protein, at 959,627 to 960,616
SMc00978
SMc00977: SMc00977 - acyl-CoA dehydrogenase, at 960,794 to 962,575
SMc00977
SMc00976: SMc00976 - enoyl-CoA hydratase, at 962,585 to 963,337
SMc00976
Position (kb) 960
961
962
963 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 959.803 kb on + strand, within SMc00978 at 959.803 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.805 kb on + strand, within SMc00978 at 959.806 kb on - strand at 959.806 kb on - strand, within SMc00978 at 959.806 kb on - strand, within SMc00978 at 959.806 kb on - strand, within SMc00978 at 959.806 kb on - strand, within SMc00978 at 959.938 kb on + strand, within SMc00978 at 959.939 kb on - strand, within SMc00978 at 960.081 kb on + strand, within SMc00978 at 960.096 kb on - strand, within SMc00978 at 960.593 kb on + strand at 960.593 kb on + strand at 960.593 kb on + strand at 960.593 kb on + strand at 960.593 kb on + strand at 960.594 kb on - strand at 960.594 kb on - strand at 960.653 kb on - strand at 960.653 kb on - strand at 960.653 kb on - strand at 960.744 kb on + strand at 960.745 kb on - strand at 960.745 kb on - strand at 960.763 kb on + strand at 960.764 kb on - strand at 960.797 kb on + strand at 960.797 kb on + strand at 960.797 kb on + strand at 960.797 kb on + strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 960.798 kb on - strand at 961.349 kb on + strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.350 kb on - strand, within SMc00977 at 961.408 kb on + strand, within SMc00977 at 961.422 kb on + strand, within SMc00977 at 961.592 kb on + strand, within SMc00977 at 961.758 kb on - strand, within SMc00977 at 961.892 kb on + strand, within SMc00977 at 962.085 kb on - strand, within SMc00977 at 962.115 kb on - strand, within SMc00977 at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.408 kb on + strand at 962.621 kb on + strand at 962.687 kb on + strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 962.688 kb on - strand, within SMc00976 at 963.335 kb on + strand at 963.394 kb on + strand at 963.394 kb on + strand at 963.395 kb on - strand at 963.395 kb on - strand at 963.421 kb on - strand at 963.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 959,803 + SMc00978 0.18 -0.1 959,803 + SMc00978 0.18 +0.9 959,805 + SMc00978 0.18 +0.1 959,805 + SMc00978 0.18 +0.6 959,805 + SMc00978 0.18 -0.6 959,805 + SMc00978 0.18 +0.4 959,805 + SMc00978 0.18 +0.5 959,806 - +0.6 959,806 - SMc00978 0.18 -0.7 959,806 - SMc00978 0.18 -0.5 959,806 - SMc00978 0.18 +1.9 959,806 - SMc00978 0.18 +0.3 959,938 + SMc00978 0.31 -0.1 959,939 - SMc00978 0.32 +1.4 960,081 + SMc00978 0.46 +0.6 960,096 - SMc00978 0.47 +0.8 960,593 + +0.0 960,593 + +1.3 960,593 + +0.2 960,593 + +0.2 960,593 + -0.2 960,594 - +0.1 960,594 - -0.6 960,653 - -0.5 960,653 - -0.3 960,653 - +0.2 960,744 + +0.2 960,745 - -0.2 960,745 - +0.6 960,763 + -0.3 960,764 - -0.1 960,797 + -0.4 960,797 + -0.3 960,797 + +0.6 960,797 + -0.4 960,798 - -2.0 960,798 - -0.3 960,798 - -0.2 960,798 - +1.3 960,798 - +0.0 960,798 - -0.9 960,798 - +0.8 961,349 + SMc00977 0.31 -0.9 961,350 - SMc00977 0.31 -0.5 961,350 - SMc00977 0.31 -0.0 961,350 - SMc00977 0.31 +0.6 961,350 - SMc00977 0.31 +0.4 961,408 + SMc00977 0.34 -1.2 961,422 + SMc00977 0.35 +1.1 961,592 + SMc00977 0.45 +1.4 961,758 - SMc00977 0.54 -0.4 961,892 + SMc00977 0.62 -1.1 962,085 - SMc00977 0.72 -0.5 962,115 - SMc00977 0.74 -0.4 962,408 + +0.3 962,408 + -0.9 962,408 + -0.4 962,408 + -0.7 962,621 + -0.8 962,687 + SMc00976 0.14 +1.1 962,688 - SMc00976 0.14 -0.0 962,688 - SMc00976 0.14 +2.0 963,335 + -1.0 963,394 + +2.9 963,394 + +0.6 963,395 - -0.9 963,395 - +0.8 963,421 - -1.0 963,421 - -1.0
Or see this region's nucleotide sequence