Strain Fitness in Sinorhizobium meliloti 1021 around SMc00781

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00780 and SMc00781 are separated by 115 nucleotidesSMc00781 and SMc00782 are separated by 259 nucleotides SMc00780: SMc00780 - transcriptional regulator, at 800,319 to 801,200 SMc00780 SMc00781: SMc00781 - malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data), at 801,316 to 802,812 SMc00781 SMc00782: SMc00782 - hypothetical protein, at 803,072 to 804,184 SMc00782 Position (kb) 801 802 803Strain fitness (log2 ratio) -2 -1 0 1 2at 800.410 kb on + strand, within SMc00780at 800.410 kb on + strand, within SMc00780at 800.411 kb on - strand, within SMc00780at 800.457 kb on + strand, within SMc00780at 800.458 kb on - strand, within SMc00780at 800.458 kb on - strand, within SMc00780at 800.483 kb on + strand, within SMc00780at 800.483 kb on + strand, within SMc00780at 800.485 kb on + strand, within SMc00780at 800.486 kb on - strand, within SMc00780at 800.486 kb on - strand, within SMc00780at 800.630 kb on - strand, within SMc00780at 800.693 kb on - strand, within SMc00780at 800.720 kb on + strand, within SMc00780at 800.720 kb on + strand, within SMc00780at 800.720 kb on + strand, within SMc00780at 800.721 kb on - strand, within SMc00780at 800.721 kb on - strand, within SMc00780at 800.721 kb on - strand, within SMc00780at 800.721 kb on - strand, within SMc00780at 800.722 kb on + strand, within SMc00780at 800.723 kb on - strand, within SMc00780at 800.723 kb on - strand, within SMc00780at 801.178 kb on - strandat 801.273 kb on - strandat 801.319 kb on + strandat 801.319 kb on + strandat 801.319 kb on + strandat 801.320 kb on - strandat 801.320 kb on - strandat 801.715 kb on + strand, within SMc00781at 801.715 kb on + strand, within SMc00781at 801.715 kb on + strand, within SMc00781at 801.783 kb on + strand, within SMc00781at 801.783 kb on + strand, within SMc00781at 801.783 kb on + strand, within SMc00781at 801.981 kb on + strand, within SMc00781at 802.010 kb on - strand, within SMc00781at 802.135 kb on + strand, within SMc00781at 802.255 kb on + strand, within SMc00781at 802.256 kb on - strand, within SMc00781at 802.257 kb on + strand, within SMc00781at 802.453 kb on + strand, within SMc00781at 802.453 kb on + strand, within SMc00781at 802.454 kb on - strand, within SMc00781at 802.454 kb on - strand, within SMc00781at 802.454 kb on - strand, within SMc00781at 802.454 kb on - strandat 802.504 kb on + strand, within SMc00781at 802.504 kb on + strand, within SMc00781at 802.541 kb on - strand, within SMc00781at 802.561 kb on + strand, within SMc00781at 802.562 kb on - strand, within SMc00781at 802.562 kb on - strand, within SMc00781at 802.655 kb on - strand, within SMc00781at 802.942 kb on + strandat 802.943 kb on - strandat 802.943 kb on - strandat 802.971 kb on + strandat 802.972 kb on - strandat 802.972 kb on - strandat 802.972 kb on - strandat 802.972 kb on - strandat 802.972 kb on - strandat 802.972 kb on - strandat 802.972 kb on - strandat 802.981 kb on - strandat 802.981 kb on - strandat 802.981 kb on - strandat 803.056 kb on - strandat 803.174 kb on + strandat 803.185 kb on - strand, within SMc00782at 803.197 kb on + strand, within SMc00782at 803.214 kb on + strand, within SMc00782at 803.215 kb on - strand, within SMc00782at 803.228 kb on + strand, within SMc00782at 803.228 kb on + strand, within SMc00782at 803.228 kb on + strand, within SMc00782at 803.229 kb on - strand, within SMc00782at 803.229 kb on - strand, within SMc00782at 803.229 kb on - strand, within SMc00782at 803.262 kb on - strand, within SMc00782at 803.303 kb on + strand, within SMc00782at 803.354 kb on + strand, within SMc00782at 803.366 kb on + strand, within SMc00782at 803.366 kb on + strand, within SMc00782at 803.433 kb on + strand, within SMc00782at 803.434 kb on - strand, within SMc00782at 803.434 kb on - strand, within SMc00782at 803.434 kb on - strand, within SMc00782at 803.483 kb on + strand, within SMc00782at 803.539 kb on + strand, within SMc00782at 803.607 kb on - strand, within SMc00782at 803.607 kb on - strand, within SMc00782at 803.613 kb on - strand, within SMc00782

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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800,410 + SMc00780 0.10 +0.1
800,410 + SMc00780 0.10 +0.0
800,411 - SMc00780 0.10 -0.1
800,457 + SMc00780 0.16 -0.1
800,458 - SMc00780 0.16 -0.7
800,458 - SMc00780 0.16 -0.6
800,483 + SMc00780 0.19 -0.0
800,483 + SMc00780 0.19 -0.3
800,485 + SMc00780 0.19 -0.4
800,486 - SMc00780 0.19 -0.1
800,486 - SMc00780 0.19 -0.8
800,630 - SMc00780 0.35 -0.1
800,693 - SMc00780 0.42 +0.7
800,720 + SMc00780 0.45 -0.3
800,720 + SMc00780 0.45 -0.0
800,720 + SMc00780 0.45 -0.3
800,721 - SMc00780 0.46 -0.3
800,721 - SMc00780 0.46 -0.0
800,721 - SMc00780 0.46 +0.4
800,721 - SMc00780 0.46 +0.0
800,722 + SMc00780 0.46 -0.1
800,723 - SMc00780 0.46 -0.3
800,723 - SMc00780 0.46 -0.4
801,178 - -0.4
801,273 - +1.0
801,319 + +1.6
801,319 + +0.8
801,319 + +1.8
801,320 - +2.1
801,320 - +1.5
801,715 + SMc00781 0.27 +1.1
801,715 + SMc00781 0.27 +1.0
801,715 + SMc00781 0.27 +0.9
801,783 + SMc00781 0.31 +1.1
801,783 + SMc00781 0.31 +1.7
801,783 + SMc00781 0.31 +1.6
801,981 + SMc00781 0.44 +1.5
802,010 - SMc00781 0.46 +1.3
802,135 + SMc00781 0.55 +1.5
802,255 + SMc00781 0.63 +1.2
802,256 - SMc00781 0.63 +2.5
802,257 + SMc00781 0.63 +0.8
802,453 + SMc00781 0.76 +1.4
802,453 + SMc00781 0.76 +1.1
802,454 - SMc00781 0.76 +0.1
802,454 - SMc00781 0.76 +1.9
802,454 - SMc00781 0.76 -1.2
802,454 - +2.2
802,504 + SMc00781 0.79 +1.6
802,504 + SMc00781 0.79 +1.5
802,541 - SMc00781 0.82 +0.2
802,561 + SMc00781 0.83 +0.9
802,562 - SMc00781 0.83 +1.4
802,562 - SMc00781 0.83 +1.4
802,655 - SMc00781 0.89 +0.8
802,942 + -0.0
802,943 - +0.4
802,943 - +0.7
802,971 + +1.2
802,972 - +0.3
802,972 - +0.5
802,972 - +0.0
802,972 - -0.2
802,972 - -1.1
802,972 - -0.2
802,972 - +0.1
802,981 - -0.0
802,981 - +0.1
802,981 - +0.5
803,056 - +0.6
803,174 + -0.3
803,185 - SMc00782 0.10 +0.4
803,197 + SMc00782 0.11 -2.1
803,214 + SMc00782 0.13 -1.0
803,215 - SMc00782 0.13 -1.2
803,228 + SMc00782 0.14 +1.6
803,228 + SMc00782 0.14 -0.6
803,228 + SMc00782 0.14 +0.4
803,229 - SMc00782 0.14 -0.3
803,229 - SMc00782 0.14 -0.3
803,229 - SMc00782 0.14 +0.2
803,262 - SMc00782 0.17 -0.4
803,303 + SMc00782 0.21 +0.1
803,354 + SMc00782 0.25 -1.3
803,366 + SMc00782 0.26 -0.1
803,366 + SMc00782 0.26 -0.1
803,433 + SMc00782 0.32 -0.7
803,434 - SMc00782 0.33 +0.4
803,434 - SMc00782 0.33 -1.3
803,434 - SMc00782 0.33 -0.3
803,483 + SMc00782 0.37 +0.1
803,539 + SMc00782 0.42 +1.0
803,607 - SMc00782 0.48 +0.0
803,607 - SMc00782 0.48 -0.1
803,613 - SMc00782 0.49 +0.1

Or see this region's nucleotide sequence