Strain Fitness in Sinorhizobium meliloti 1021 around SMc00433

Experiment: 5-Aminovaleric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00432 and SMc00433 are separated by 154 nucleotidesSMc00433 and SMc01166 are separated by 171 nucleotides SMc00432: SMc00432 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data), at 379,920 to 380,720 SMc00432 SMc00433: SMc00433 - Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data), at 380,875 to 381,777 SMc00433 SMc01166: SMc01166 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data), at 381,949 to 383,802 SMc01166 Position (kb) 380 381 382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 379.875 kb on + strandat 379.876 kb on - strandat 379.876 kb on - strandat 380.002 kb on + strand, within SMc00432at 380.003 kb on - strand, within SMc00432at 380.005 kb on + strand, within SMc00432at 380.005 kb on + strand, within SMc00432at 380.005 kb on + strand, within SMc00432at 380.006 kb on - strand, within SMc00432at 380.041 kb on + strand, within SMc00432at 380.042 kb on - strand, within SMc00432at 380.061 kb on + strand, within SMc00432at 380.062 kb on - strand, within SMc00432at 380.113 kb on + strand, within SMc00432at 380.158 kb on + strand, within SMc00432at 380.158 kb on + strandat 380.158 kb on + strand, within SMc00432at 380.158 kb on + strand, within SMc00432at 380.159 kb on - strand, within SMc00432at 380.161 kb on + strand, within SMc00432at 380.162 kb on - strand, within SMc00432at 380.162 kb on - strand, within SMc00432at 380.162 kb on - strand, within SMc00432at 380.162 kb on - strand, within SMc00432at 380.162 kb on - strand, within SMc00432at 380.176 kb on + strand, within SMc00432at 380.176 kb on + strand, within SMc00432at 380.311 kb on + strand, within SMc00432at 380.312 kb on - strand, within SMc00432at 380.312 kb on - strand, within SMc00432at 380.464 kb on + strand, within SMc00432at 380.464 kb on + strand, within SMc00432at 380.465 kb on - strand, within SMc00432at 380.642 kb on - strandat 380.642 kb on - strandat 380.722 kb on + strandat 380.722 kb on + strandat 380.722 kb on + strandat 380.722 kb on + strandat 380.722 kb on + strandat 380.722 kb on + strandat 380.722 kb on + strandat 380.723 kb on - strandat 380.723 kb on - strandat 380.723 kb on - strandat 380.820 kb on + strandat 380.821 kb on - strandat 380.876 kb on + strandat 380.877 kb on - strandat 380.877 kb on - strandat 380.877 kb on - strandat 381.000 kb on - strand, within SMc00433at 381.177 kb on + strand, within SMc00433at 381.180 kb on - strand, within SMc00433at 381.180 kb on - strand, within SMc00433at 381.180 kb on - strand, within SMc00433at 381.600 kb on - strand, within SMc00433at 381.600 kb on - strand, within SMc00433at 381.600 kb on - strand, within SMc00433at 381.645 kb on + strand, within SMc00433at 381.645 kb on + strand, within SMc00433at 381.645 kb on + strand, within SMc00433at 381.645 kb on + strand, within SMc00433at 381.645 kb on + strand, within SMc00433at 381.645 kb on + strand, within SMc00433at 381.646 kb on - strand, within SMc00433at 381.646 kb on - strand, within SMc00433at 381.646 kb on - strand, within SMc00433at 381.646 kb on - strand, within SMc00433at 381.646 kb on - strand, within SMc00433at 381.646 kb on - strand, within SMc00433at 381.799 kb on + strandat 381.799 kb on + strandat 381.901 kb on - strandat 381.912 kb on - strandat 382.379 kb on + strand, within SMc01166at 382.379 kb on + strand, within SMc01166at 382.379 kb on + strand, within SMc01166at 382.380 kb on - strand, within SMc01166at 382.380 kb on - strand, within SMc01166at 382.380 kb on - strand, within SMc01166at 382.380 kb on - strand, within SMc01166at 382.380 kb on - strand, within SMc01166at 382.457 kb on + strand, within SMc01166at 382.458 kb on - strand, within SMc01166at 382.718 kb on + strand, within SMc01166at 382.719 kb on - strand, within SMc01166

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric (C)
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379,875 + +0.3
379,876 - -0.1
379,876 - -0.1
380,002 + SMc00432 0.10 -0.3
380,003 - SMc00432 0.10 -0.4
380,005 + SMc00432 0.11 +1.3
380,005 + SMc00432 0.11 -1.1
380,005 + SMc00432 0.11 -0.5
380,006 - SMc00432 0.11 -0.2
380,041 + SMc00432 0.15 -0.8
380,042 - SMc00432 0.15 +0.2
380,061 + SMc00432 0.18 -0.7
380,062 - SMc00432 0.18 +0.3
380,113 + SMc00432 0.24 -0.2
380,158 + SMc00432 0.30 -0.3
380,158 + +1.5
380,158 + SMc00432 0.30 +0.5
380,158 + SMc00432 0.30 -0.4
380,159 - SMc00432 0.30 +0.0
380,161 + SMc00432 0.30 -0.1
380,162 - SMc00432 0.30 -0.1
380,162 - SMc00432 0.30 +0.4
380,162 - SMc00432 0.30 +1.3
380,162 - SMc00432 0.30 +0.2
380,162 - SMc00432 0.30 +0.0
380,176 + SMc00432 0.32 +0.7
380,176 + SMc00432 0.32 -0.1
380,311 + SMc00432 0.49 +1.2
380,312 - SMc00432 0.49 -0.1
380,312 - SMc00432 0.49 +0.4
380,464 + SMc00432 0.68 +0.0
380,464 + SMc00432 0.68 +0.4
380,465 - SMc00432 0.68 -0.9
380,642 - +0.1
380,642 - +0.7
380,722 + +1.3
380,722 + +0.0
380,722 + +0.2
380,722 + +0.3
380,722 + -0.8
380,722 + -0.1
380,722 + -0.6
380,723 - -1.1
380,723 - +0.8
380,723 - -0.0
380,820 + +0.2
380,821 - +0.7
380,876 + -0.6
380,877 - +0.7
380,877 - +0.1
380,877 - +0.1
381,000 - SMc00433 0.14 -0.5
381,177 + SMc00433 0.33 +0.4
381,180 - SMc00433 0.34 -0.3
381,180 - SMc00433 0.34 -1.4
381,180 - SMc00433 0.34 +1.5
381,600 - SMc00433 0.80 -0.4
381,600 - SMc00433 0.80 -0.6
381,600 - SMc00433 0.80 +0.1
381,645 + SMc00433 0.85 +0.5
381,645 + SMc00433 0.85 -0.5
381,645 + SMc00433 0.85 +0.2
381,645 + SMc00433 0.85 +0.1
381,645 + SMc00433 0.85 +0.2
381,645 + SMc00433 0.85 -0.1
381,646 - SMc00433 0.85 +0.1
381,646 - SMc00433 0.85 -0.1
381,646 - SMc00433 0.85 -0.0
381,646 - SMc00433 0.85 +1.5
381,646 - SMc00433 0.85 +0.5
381,646 - SMc00433 0.85 -0.3
381,799 + -0.5
381,799 + -0.1
381,901 - -0.2
381,912 - +0.1
382,379 + SMc01166 0.23 +0.5
382,379 + SMc01166 0.23 -0.8
382,379 + SMc01166 0.23 +0.5
382,380 - SMc01166 0.23 -3.4
382,380 - SMc01166 0.23 -0.1
382,380 - SMc01166 0.23 -0.1
382,380 - SMc01166 0.23 -0.1
382,380 - SMc01166 0.23 -0.8
382,457 + SMc01166 0.27 +0.5
382,458 - SMc01166 0.27 -0.6
382,718 + SMc01166 0.41 +2.2
382,719 - SMc01166 0.42 +0.8

Or see this region's nucleotide sequence