Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1188 and SMa1191 are separated by 197 nucleotides SMa1191 and SMa1192 are separated by 78 nucleotides SMa1192 and SMa1194 are separated by 48 nucleotides
SMa1188: SMa1188 - NosX accesory protein, at 653,531 to 654,535
SMa1188
SMa1191: SMa1191 - nitric oxide dioxygenase, at 654,733 to 655,944
SMa1191
SMa1192: SMa1192 - hypothetical protein, at 656,023 to 656,316
SMa1192
SMa1194: SMa1194 - NnrS dehydrogenase, at 656,365 to 657,546
SMa1194
Position (kb) 654
655
656 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 653.897 kb on - strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.921 kb on + strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 653.922 kb on - strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.078 kb on + strand, within SMa1188 at 654.478 kb on - strand at 654.621 kb on - strand at 654.675 kb on + strand at 654.675 kb on + strand at 654.676 kb on - strand at 654.676 kb on - strand at 654.676 kb on - strand at 654.820 kb on - strand at 654.865 kb on - strand, within SMa1191 at 654.917 kb on - strand, within SMa1191 at 654.917 kb on - strand, within SMa1191 at 654.922 kb on + strand, within SMa1191 at 654.981 kb on + strand, within SMa1191 at 655.016 kb on - strand, within SMa1191 at 655.109 kb on - strand, within SMa1191 at 655.109 kb on - strand, within SMa1191 at 655.127 kb on + strand, within SMa1191 at 655.127 kb on + strand, within SMa1191 at 655.128 kb on - strand, within SMa1191 at 655.154 kb on - strand, within SMa1191 at 655.301 kb on - strand, within SMa1191 at 655.302 kb on + strand, within SMa1191 at 655.303 kb on - strand, within SMa1191 at 655.303 kb on - strand, within SMa1191 at 655.326 kb on + strand, within SMa1191 at 655.326 kb on + strand, within SMa1191 at 655.327 kb on - strand, within SMa1191 at 655.327 kb on - strand, within SMa1191 at 655.347 kb on - strand, within SMa1191 at 655.387 kb on + strand, within SMa1191 at 655.499 kb on - strand, within SMa1191 at 655.510 kb on + strand, within SMa1191 at 655.511 kb on - strand, within SMa1191 at 655.511 kb on - strand, within SMa1191 at 655.520 kb on + strand, within SMa1191 at 655.521 kb on - strand, within SMa1191 at 655.629 kb on - strand, within SMa1191 at 655.629 kb on - strand, within SMa1191 at 655.652 kb on + strand, within SMa1191 at 655.689 kb on + strand, within SMa1191 at 655.690 kb on - strand, within SMa1191 at 655.720 kb on + strand, within SMa1191 at 655.721 kb on - strand, within SMa1191 at 655.759 kb on + strand, within SMa1191 at 655.828 kb on + strand at 655.828 kb on + strand at 655.829 kb on - strand at 655.829 kb on - strand at 655.910 kb on - strand at 656.073 kb on - strand, within SMa1192 at 656.334 kb on + strand at 656.335 kb on - strand at 656.335 kb on - strand at 656.341 kb on - strand at 656.367 kb on - strand at 656.367 kb on - strand at 656.480 kb on + strand at 656.480 kb on + strand at 656.480 kb on + strand at 656.480 kb on + strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.481 kb on - strand at 656.485 kb on + strand, within SMa1194 at 656.485 kb on + strand, within SMa1194 at 656.486 kb on - strand, within SMa1194 at 656.691 kb on + strand, within SMa1194 at 656.691 kb on + strand, within SMa1194 at 656.692 kb on - strand, within SMa1194 at 656.750 kb on - strand, within SMa1194 at 656.751 kb on + strand, within SMa1194 at 656.751 kb on + strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.754 kb on + strand, within SMa1194 at 656.754 kb on + strand, within SMa1194 at 656.878 kb on - strand, within SMa1194
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 653,897 - SMa1188 0.36 +0.0 653,921 + SMa1188 0.39 +0.3 653,921 + SMa1188 0.39 +2.1 653,922 - SMa1188 0.39 -0.9 653,922 - SMa1188 0.39 +0.9 653,922 - SMa1188 0.39 +0.5 654,078 + SMa1188 0.54 -0.0 654,078 + SMa1188 0.54 +0.0 654,478 - -0.2 654,621 - -1.4 654,675 + +0.3 654,675 + -0.3 654,676 - -0.4 654,676 - +0.9 654,676 - +0.6 654,820 - +1.1 654,865 - SMa1191 0.11 -0.5 654,917 - SMa1191 0.15 -0.9 654,917 - SMa1191 0.15 +0.5 654,922 + SMa1191 0.16 +0.3 654,981 + SMa1191 0.20 +0.6 655,016 - SMa1191 0.23 +0.1 655,109 - SMa1191 0.31 +0.5 655,109 - SMa1191 0.31 +0.4 655,127 + SMa1191 0.33 -0.1 655,127 + SMa1191 0.33 +0.6 655,128 - SMa1191 0.33 +0.2 655,154 - SMa1191 0.35 +0.7 655,301 - SMa1191 0.47 +0.1 655,302 + SMa1191 0.47 -0.0 655,303 - SMa1191 0.47 +1.7 655,303 - SMa1191 0.47 +0.7 655,326 + SMa1191 0.49 +0.0 655,326 + SMa1191 0.49 +1.8 655,327 - SMa1191 0.49 +0.1 655,327 - SMa1191 0.49 -0.1 655,347 - SMa1191 0.51 -0.1 655,387 + SMa1191 0.54 +1.4 655,499 - SMa1191 0.63 +1.9 655,510 + SMa1191 0.64 +0.0 655,511 - SMa1191 0.64 +0.1 655,511 - SMa1191 0.64 -0.9 655,520 + SMa1191 0.65 +0.0 655,521 - SMa1191 0.65 +1.1 655,629 - SMa1191 0.74 -0.7 655,629 - SMa1191 0.74 -0.3 655,652 + SMa1191 0.76 +0.8 655,689 + SMa1191 0.79 -0.4 655,690 - SMa1191 0.79 +0.3 655,720 + SMa1191 0.81 -0.1 655,721 - SMa1191 0.82 +0.1 655,759 + SMa1191 0.85 -1.7 655,828 + -0.4 655,828 + +0.3 655,829 - +0.0 655,829 - -0.7 655,910 - +0.5 656,073 - SMa1192 0.17 +0.0 656,334 + +0.6 656,335 - +0.1 656,335 - -0.4 656,341 - +1.3 656,367 - +2.1 656,367 - -0.3 656,480 + +0.1 656,480 + +0.4 656,480 + +0.6 656,480 + +0.5 656,481 - +0.1 656,481 - -0.4 656,481 - -1.4 656,481 - -0.6 656,481 - -1.2 656,485 + SMa1194 0.10 +0.2 656,485 + SMa1194 0.10 -0.4 656,486 - SMa1194 0.10 -0.5 656,691 + SMa1194 0.28 -0.1 656,691 + SMa1194 0.28 +0.9 656,692 - SMa1194 0.28 +0.6 656,750 - SMa1194 0.33 +0.7 656,751 + SMa1194 0.33 +0.3 656,751 + SMa1194 0.33 -3.1 656,752 - SMa1194 0.33 +0.4 656,752 - SMa1194 0.33 +0.3 656,752 - SMa1194 0.33 +0.2 656,752 - SMa1194 0.33 +0.4 656,752 - SMa1194 0.33 -0.4 656,754 + SMa1194 0.33 -0.6 656,754 + SMa1194 0.33 +0.7 656,878 - SMa1194 0.43 +0.4
Or see this region's nucleotide sequence