Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1161 and SMa1162 are separated by 151 nucleotides SMa1162 and SMa1163 are separated by 129 nucleotides SMa1163 and SMa1166 are separated by 114 nucleotides
SMa1161: SMa1161 - hypothetical protein, at 636,148 to 636,429
SMa1161
SMa1162: SMa1162 - hypothetical protein, at 636,581 to 637,258
SMa1162
SMa1163: SMa1163 - Cation transport P-type ATPase, at 637,388 to 639,787
SMa1163
SMa1166: SMa1166 - hydrolase, at 639,902 to 640,945
SMa1166
Position (kb) 637
638
639
640 Strain fitness (log2 ratio) -2
-1
0
1
2 at 636.418 kb on - strand at 636.601 kb on + strand at 636.645 kb on - strand at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.831 kb on + strand, within SMa1162 at 636.832 kb on - strand, within SMa1162 at 636.836 kb on + strand, within SMa1162 at 636.837 kb on - strand, within SMa1162 at 636.837 kb on - strand, within SMa1162 at 636.933 kb on - strand, within SMa1162 at 637.147 kb on + strand, within SMa1162 at 637.147 kb on + strand, within SMa1162 at 637.184 kb on + strand, within SMa1162 at 637.229 kb on - strand at 637.250 kb on + strand at 637.289 kb on + strand at 637.460 kb on - strand at 637.460 kb on - strand at 637.468 kb on + strand at 637.469 kb on - strand at 637.469 kb on - strand at 637.543 kb on - strand at 637.561 kb on - strand at 637.763 kb on + strand, within SMa1163 at 637.763 kb on + strand, within SMa1163 at 637.764 kb on - strand, within SMa1163 at 638.431 kb on + strand, within SMa1163 at 638.454 kb on + strand, within SMa1163 at 638.455 kb on - strand, within SMa1163 at 638.455 kb on - strand, within SMa1163 at 638.637 kb on + strand, within SMa1163 at 638.637 kb on + strand, within SMa1163 at 638.637 kb on + strand, within SMa1163 at 638.637 kb on + strand, within SMa1163 at 638.637 kb on + strand, within SMa1163 at 638.637 kb on + strand, within SMa1163 at 638.638 kb on - strand, within SMa1163 at 638.638 kb on - strand, within SMa1163 at 638.638 kb on - strand, within SMa1163 at 638.715 kb on + strand, within SMa1163 at 638.884 kb on + strand, within SMa1163 at 639.191 kb on + strand, within SMa1163 at 639.191 kb on + strand, within SMa1163 at 639.191 kb on + strand, within SMa1163 at 639.192 kb on - strand, within SMa1163 at 639.192 kb on - strand, within SMa1163 at 639.193 kb on + strand, within SMa1163 at 639.193 kb on + strand, within SMa1163 at 639.292 kb on - strand, within SMa1163 at 639.423 kb on + strand, within SMa1163 at 639.423 kb on + strand, within SMa1163 at 639.424 kb on - strand, within SMa1163 at 639.424 kb on - strand, within SMa1163 at 639.431 kb on - strand, within SMa1163 at 639.548 kb on + strand at 639.820 kb on + strand at 639.874 kb on + strand at 639.933 kb on + strand at 639.933 kb on + strand at 639.934 kb on - strand at 639.934 kb on - strand at 639.947 kb on - strand at 639.986 kb on + strand at 640.067 kb on + strand, within SMa1166 at 640.630 kb on + strand, within SMa1166 at 640.630 kb on + strand, within SMa1166 at 640.740 kb on + strand, within SMa1166
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 636,418 - +0.3 636,601 + +0.5 636,645 - -0.3 636,831 + SMa1162 0.37 +1.1 636,831 + SMa1162 0.37 +0.7 636,831 + SMa1162 0.37 +0.9 636,831 + SMa1162 0.37 +0.1 636,831 + SMa1162 0.37 +0.6 636,831 + SMa1162 0.37 +0.5 636,831 + SMa1162 0.37 +0.9 636,832 - SMa1162 0.37 -0.1 636,836 + SMa1162 0.38 +1.1 636,837 - SMa1162 0.38 +0.3 636,837 - SMa1162 0.38 +0.1 636,933 - SMa1162 0.52 +0.5 637,147 + SMa1162 0.83 +1.1 637,147 + SMa1162 0.83 +1.3 637,184 + SMa1162 0.89 -2.0 637,229 - +0.8 637,250 + +0.1 637,289 + -0.4 637,460 - +0.3 637,460 - +0.3 637,468 + -1.1 637,469 - +0.2 637,469 - +0.1 637,543 - +0.7 637,561 - +1.5 637,763 + SMa1163 0.16 -0.2 637,763 + SMa1163 0.16 +1.0 637,764 - SMa1163 0.16 +0.4 638,431 + SMa1163 0.43 +0.2 638,454 + SMa1163 0.44 -0.1 638,455 - SMa1163 0.44 +0.2 638,455 - SMa1163 0.44 +0.3 638,637 + SMa1163 0.52 +0.6 638,637 + SMa1163 0.52 -0.6 638,637 + SMa1163 0.52 +0.3 638,637 + SMa1163 0.52 +2.4 638,637 + SMa1163 0.52 +1.4 638,637 + SMa1163 0.52 -1.9 638,638 - SMa1163 0.52 +1.8 638,638 - SMa1163 0.52 +0.7 638,638 - SMa1163 0.52 +1.1 638,715 + SMa1163 0.55 -0.3 638,884 + SMa1163 0.62 -0.3 639,191 + SMa1163 0.75 +0.6 639,191 + SMa1163 0.75 +0.4 639,191 + SMa1163 0.75 +0.6 639,192 - SMa1163 0.75 -0.1 639,192 - SMa1163 0.75 +0.3 639,193 + SMa1163 0.75 +0.3 639,193 + SMa1163 0.75 +1.0 639,292 - SMa1163 0.79 -0.1 639,423 + SMa1163 0.85 +0.5 639,423 + SMa1163 0.85 +0.5 639,424 - SMa1163 0.85 +0.2 639,424 - SMa1163 0.85 +0.9 639,431 - SMa1163 0.85 +0.7 639,548 + +0.6 639,820 + +0.0 639,874 + +0.8 639,933 + -0.2 639,933 + +0.4 639,934 - +0.7 639,934 - +0.3 639,947 - +0.7 639,986 + -0.1 640,067 + SMa1166 0.16 +0.2 640,630 + SMa1166 0.70 -0.3 640,630 + SMa1166 0.70 -0.5 640,740 + SMa1166 0.80 +0.3
Or see this region's nucleotide sequence