Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21215 and SM_b21307 are separated by 117 nucleotides SM_b21307 and SM_b21308 are separated by 44 nucleotides
SM_b21215: SM_b21215 - dipeptide uptake ABC transporter substrate-binding protein precursor, at 968,095 to 969,702
_b21215
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
Position (kb) 969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 969.002 kb on + strand, within SM_b21215 at 969.059 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.126 kb on - strand, within SM_b21215 at 969.369 kb on - strand, within SM_b21215 at 969.386 kb on + strand, within SM_b21215 at 969.387 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.447 kb on + strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.450 kb on - strand, within SM_b21215 at 969.524 kb on - strand, within SM_b21215 at 969.592 kb on + strand at 969.817 kb on - strand at 969.853 kb on - strand at 970.010 kb on + strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.115 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.346 kb on + strand, within SM_b21307 at 970.347 kb on - strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.541 kb on + strand, within SM_b21307 at 970.542 kb on - strand, within SM_b21307 at 970.762 kb on + strand at 970.763 kb on - strand at 970.788 kb on - strand at 970.843 kb on + strand at 970.870 kb on + strand at 970.871 kb on - strand at 971.434 kb on + strand, within SM_b21308 at 971.478 kb on + strand, within SM_b21308 at 971.479 kb on - strand, within SM_b21308 at 971.540 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 969,002 + SM_b21215 0.56 +0.2 969,059 + SM_b21215 0.60 +0.3 969,117 + SM_b21215 0.64 +0.9 969,117 + SM_b21215 0.64 -0.7 969,118 - SM_b21215 0.64 +0.9 969,118 - SM_b21215 0.64 +0.2 969,118 - SM_b21215 0.64 -0.3 969,118 - SM_b21215 0.64 -1.4 969,126 - SM_b21215 0.64 +0.2 969,369 - SM_b21215 0.79 +0.5 969,386 + SM_b21215 0.80 -0.8 969,387 - SM_b21215 0.80 -1.1 969,410 - SM_b21215 0.82 +0.4 969,410 - SM_b21215 0.82 -1.6 969,447 + SM_b21215 0.84 +0.3 969,448 - SM_b21215 0.84 -0.6 969,448 - SM_b21215 0.84 -0.2 969,448 - SM_b21215 0.84 +1.0 969,450 - SM_b21215 0.84 -1.3 969,524 - SM_b21215 0.89 +1.5 969,592 + +0.3 969,817 - -2.5 969,853 - -1.8 970,010 + SM_b21307 0.19 +0.5 970,011 - SM_b21307 0.20 -0.1 970,011 - SM_b21307 0.20 -0.1 970,115 + SM_b21307 0.30 -0.4 970,254 + SM_b21307 0.44 +1.2 970,254 + SM_b21307 0.44 +3.2 970,254 + SM_b21307 0.44 -0.4 970,254 + SM_b21307 0.44 -0.4 970,254 + SM_b21307 0.44 -0.7 970,254 + SM_b21307 0.44 -0.8 970,254 + SM_b21307 0.44 +0.1 970,255 - SM_b21307 0.44 -0.1 970,255 - SM_b21307 0.44 -0.5 970,255 - SM_b21307 0.44 +0.1 970,255 - SM_b21307 0.44 -0.2 970,338 - SM_b21307 0.53 +0.6 970,338 - SM_b21307 0.53 -1.6 970,346 + SM_b21307 0.54 -0.2 970,347 - SM_b21307 0.54 +0.3 970,435 + SM_b21307 0.63 +0.1 970,435 + SM_b21307 0.63 +0.2 970,541 + SM_b21307 0.74 -0.0 970,542 - SM_b21307 0.74 -0.1 970,762 + +0.0 970,763 - -0.1 970,788 - +1.4 970,843 + +0.2 970,870 + +0.7 970,871 - -0.1 971,434 + SM_b21308 0.45 -0.1 971,478 + SM_b21308 0.48 -0.1 971,479 - SM_b21308 0.48 +0.1 971,540 + SM_b21308 0.53 +1.0 971,755 + SM_b21308 0.69 +0.1 971,755 + SM_b21308 0.69 -0.4
Or see this region's nucleotide sequence