Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21090 and SM_b21091 are separated by 304 nucleotides SM_b21091 and SM_b21092 are separated by 4 nucleotides SM_b21092 and SM_b21093 are separated by 24 nucleotides
SM_b21090: SM_b21090 - hypothetical protein, at 732,456 to 733,592
_b21090
SM_b21091: SM_b21091 - cell-wall lytic enzyme, muramidase (lysozyme) protein, at 733,897 to 734,907
_b21091
SM_b21092: SM_b21092 - acetyltransferase, at 734,912 to 735,388
_b21092
SM_b21093: SM_b21093 - LysR family transcriptional regulator, at 735,413 to 736,315
_b21093
Position (kb) 733
734
735 Strain fitness (log2 ratio) -1
0
1 at 732.930 kb on + strand, within SM_b21090 at 732.930 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.134 kb on + strand, within SM_b21090 at 733.135 kb on - strand, within SM_b21090 at 733.141 kb on - strand, within SM_b21090 at 733.150 kb on - strand, within SM_b21090 at 733.250 kb on - strand, within SM_b21090 at 733.470 kb on + strand, within SM_b21090 at 733.471 kb on - strand, within SM_b21090 at 733.471 kb on - strand, within SM_b21090 at 733.670 kb on - strand at 733.670 kb on - strand at 733.670 kb on - strand at 733.733 kb on + strand at 735.125 kb on + strand, within SM_b21092 at 735.170 kb on + strand, within SM_b21092 at 735.171 kb on - strand, within SM_b21092 at 735.305 kb on + strand, within SM_b21092 at 735.306 kb on - strand, within SM_b21092 at 735.323 kb on - strand, within SM_b21092 at 735.577 kb on + strand, within SM_b21093 at 735.639 kb on + strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.640 kb on - strand, within SM_b21093 at 735.702 kb on + strand, within SM_b21093 at 735.703 kb on - strand, within SM_b21093 at 735.703 kb on - strand, within SM_b21093 at 735.792 kb on + strand, within SM_b21093 at 735.792 kb on + strand, within SM_b21093 at 735.793 kb on - strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.834 kb on + strand, within SM_b21093 at 735.835 kb on - strand, within SM_b21093 at 735.878 kb on + strand, within SM_b21093 at 735.878 kb on + strand, within SM_b21093 at 735.879 kb on - strand, within SM_b21093
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 732,930 + SM_b21090 0.42 +0.4 732,930 + SM_b21090 0.42 +0.1 733,134 + SM_b21090 0.60 -0.4 733,134 + SM_b21090 0.60 -1.6 733,134 + SM_b21090 0.60 +0.6 733,134 + SM_b21090 0.60 -0.8 733,135 - SM_b21090 0.60 +0.6 733,141 - SM_b21090 0.60 -1.0 733,150 - SM_b21090 0.61 +0.5 733,250 - SM_b21090 0.70 -0.2 733,470 + SM_b21090 0.89 +0.1 733,471 - SM_b21090 0.89 -0.4 733,471 - SM_b21090 0.89 -0.8 733,670 - -0.1 733,670 - +0.1 733,670 - +0.3 733,733 + -1.0 735,125 + SM_b21092 0.45 -0.2 735,170 + SM_b21092 0.54 -1.4 735,171 - SM_b21092 0.54 +0.4 735,305 + SM_b21092 0.82 -0.2 735,306 - SM_b21092 0.83 +0.5 735,323 - SM_b21092 0.86 -0.4 735,577 + SM_b21093 0.18 +0.6 735,639 + SM_b21093 0.25 -0.1 735,640 - SM_b21093 0.25 +0.3 735,640 - SM_b21093 0.25 -0.3 735,640 - SM_b21093 0.25 -0.5 735,702 + SM_b21093 0.32 -0.2 735,703 - SM_b21093 0.32 -0.1 735,703 - SM_b21093 0.32 -0.1 735,792 + SM_b21093 0.42 -0.5 735,792 + SM_b21093 0.42 -1.3 735,793 - SM_b21093 0.42 +0.2 735,834 + SM_b21093 0.47 -0.9 735,834 + SM_b21093 0.47 -0.9 735,834 + +0.1 735,834 + SM_b21093 0.47 +0.4 735,834 + SM_b21093 0.47 +0.4 735,834 + SM_b21093 0.47 -0.4 735,835 - SM_b21093 0.47 +0.0 735,878 + SM_b21093 0.51 +1.4 735,878 + SM_b21093 0.51 -0.9 735,879 - SM_b21093 0.52 -1.2
Or see this region's nucleotide sequence