Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21056 and SM_b21057 overlap by 35 nucleotides SM_b21057 and SM_b21058 are separated by 52 nucleotides SM_b21058 and SM_b21059 are separated by 23 nucleotides SM_b21059 and SM_b21060 are separated by 4 nucleotides
SM_b21056: SM_b21056 - esterase, at 689,474 to 691,801
_b21056
SM_b21057: SM_b21057 - hypothetical protein, at 691,767 to 692,645
_b21057
SM_b21058: SM_b21058 - glucose-1-phosphate cytidylyltransferase, at 692,698 to 692,919
_b21058
SM_b21059: SM_b21059 - glucose-1-phosphate cytidylyltransferase, at 692,943 to 693,467
_b21059
SM_b21060: SM_b21060 - sugar nucleotide epimerase dehydratase, at 693,472 to 694,521
_b21060
Position (kb) 692
693 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 691.734 kb on - strand at 691.760 kb on + strand at 691.761 kb on - strand at 692.068 kb on + strand, within SM_b21057 at 692.068 kb on + strand, within SM_b21057 at 692.068 kb on + strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.069 kb on - strand, within SM_b21057 at 692.147 kb on + strand, within SM_b21057 at 692.147 kb on + strand, within SM_b21057 at 692.228 kb on + strand, within SM_b21057 at 692.236 kb on + strand, within SM_b21057 at 692.274 kb on + strand, within SM_b21057 at 692.275 kb on - strand, within SM_b21057 at 692.275 kb on - strand, within SM_b21057 at 692.531 kb on + strand, within SM_b21057 at 692.531 kb on + strand, within SM_b21057 at 692.532 kb on - strand, within SM_b21057 at 692.648 kb on + strand at 692.648 kb on + strand at 692.710 kb on - strand at 692.710 kb on - strand at 692.818 kb on + strand, within SM_b21058 at 692.819 kb on - strand, within SM_b21058 at 692.819 kb on - strand, within SM_b21058 at 692.872 kb on + strand, within SM_b21058 at 692.897 kb on - strand at 692.897 kb on - strand at 693.057 kb on - strand, within SM_b21059 at 693.288 kb on + strand, within SM_b21059 at 693.289 kb on - strand, within SM_b21059 at 693.395 kb on + strand, within SM_b21059 at 693.395 kb on + strand, within SM_b21059 at 693.396 kb on - strand, within SM_b21059 at 693.396 kb on - strand, within SM_b21059 at 693.396 kb on - strand, within SM_b21059 at 693.487 kb on - strand at 693.502 kb on + strand at 693.503 kb on - strand at 693.503 kb on - strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.506 kb on + strand at 693.507 kb on - strand at 693.507 kb on - strand at 693.507 kb on - strand at 693.507 kb on - strand at 693.677 kb on + strand, within SM_b21060 at 693.677 kb on + strand, within SM_b21060 at 693.677 kb on + strand, within SM_b21060 at 693.677 kb on + strand, within SM_b21060 at 693.678 kb on - strand, within SM_b21060 at 693.678 kb on - strand, within SM_b21060 at 693.678 kb on - strand, within SM_b21060 at 693.826 kb on + strand, within SM_b21060 at 693.827 kb on - strand, within SM_b21060 at 693.827 kb on - strand, within SM_b21060 at 693.886 kb on + strand, within SM_b21060 at 693.887 kb on - strand, within SM_b21060
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 691,734 - +0.2 691,760 + -0.4 691,761 - -0.6 692,068 + SM_b21057 0.34 +0.5 692,068 + SM_b21057 0.34 -0.6 692,068 + SM_b21057 0.34 +0.9 692,069 - SM_b21057 0.34 -0.4 692,069 - SM_b21057 0.34 +0.2 692,069 - SM_b21057 0.34 -0.5 692,069 - SM_b21057 0.34 -0.2 692,147 + SM_b21057 0.43 -0.5 692,147 + SM_b21057 0.43 +0.0 692,228 + SM_b21057 0.52 -0.0 692,236 + SM_b21057 0.53 -0.8 692,274 + SM_b21057 0.58 +0.5 692,275 - SM_b21057 0.58 +0.1 692,275 - SM_b21057 0.58 +0.6 692,531 + SM_b21057 0.87 -0.2 692,531 + SM_b21057 0.87 -0.3 692,532 - SM_b21057 0.87 -0.5 692,648 + +0.8 692,648 + +0.1 692,710 - -0.1 692,710 - -0.3 692,818 + SM_b21058 0.54 -0.3 692,819 - SM_b21058 0.55 -0.8 692,819 - SM_b21058 0.55 -0.2 692,872 + SM_b21058 0.78 -1.5 692,897 - +0.7 692,897 - -0.4 693,057 - SM_b21059 0.22 -0.6 693,288 + SM_b21059 0.66 +1.0 693,289 - SM_b21059 0.66 -0.2 693,395 + SM_b21059 0.86 -2.8 693,395 + SM_b21059 0.86 -0.3 693,396 - SM_b21059 0.86 -0.8 693,396 - SM_b21059 0.86 +0.4 693,396 - SM_b21059 0.86 +0.9 693,487 - -0.2 693,502 + -0.2 693,503 - -1.1 693,503 - -0.1 693,506 + -3.8 693,506 + -0.8 693,506 + +0.9 693,506 + +0.4 693,506 + -1.2 693,506 + +0.2 693,507 - +0.2 693,507 - -0.3 693,507 - +1.2 693,507 - -1.0 693,677 + SM_b21060 0.20 +1.0 693,677 + SM_b21060 0.20 -0.8 693,677 + SM_b21060 0.20 +0.4 693,677 + SM_b21060 0.20 -0.2 693,678 - SM_b21060 0.20 +0.1 693,678 - SM_b21060 0.20 -0.6 693,678 - SM_b21060 0.20 -0.2 693,826 + SM_b21060 0.34 -0.9 693,827 - SM_b21060 0.34 -1.3 693,827 - SM_b21060 0.34 +0.1 693,886 + SM_b21060 0.39 -1.6 693,887 - SM_b21060 0.40 -0.1
Or see this region's nucleotide sequence