Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20316 and SM_b20317 are separated by 117 nucleotides SM_b20317 and SM_b20318 are separated by 1 nucleotides
SM_b20316: SM_b20316 - sugar ABC transporter substrate-binding protein, at 317,829 to 318,830
_b20316
SM_b20317: SM_b20317 - sugar ABC transporter ATP-binding protein, at 318,948 to 320,498
_b20317
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.986 kb on - strand, within SM_b20316 at 318.212 kb on + strand, within SM_b20316 at 318.430 kb on - strand, within SM_b20316 at 318.591 kb on + strand, within SM_b20316 at 318.610 kb on + strand, within SM_b20316 at 318.649 kb on - strand, within SM_b20316 at 318.691 kb on - strand, within SM_b20316 at 318.727 kb on - strand, within SM_b20316 at 318.800 kb on + strand at 318.801 kb on - strand at 318.801 kb on - strand at 318.810 kb on + strand at 318.810 kb on + strand at 318.811 kb on - strand at 318.929 kb on + strand at 319.067 kb on + strand at 319.071 kb on + strand at 319.071 kb on + strand at 319.112 kb on + strand, within SM_b20317 at 319.113 kb on - strand, within SM_b20317 at 319.157 kb on + strand, within SM_b20317 at 319.157 kb on + strand, within SM_b20317 at 319.159 kb on - strand, within SM_b20317 at 319.227 kb on + strand, within SM_b20317 at 319.746 kb on - strand, within SM_b20317 at 319.834 kb on + strand, within SM_b20317 at 320.296 kb on + strand, within SM_b20317 at 320.297 kb on - strand, within SM_b20317 at 320.402 kb on + strand at 320.497 kb on - strand at 320.497 kb on - strand at 320.595 kb on + strand at 320.595 kb on + strand at 320.596 kb on - strand at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.785 kb on + strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.812 kb on + strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.873 kb on + strand, within SM_b20318 at 321.083 kb on - strand, within SM_b20318 at 321.121 kb on + strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand at 321.154 kb on - strand, within SM_b20318 at 321.158 kb on - strand, within SM_b20318 at 321.235 kb on + strand, within SM_b20318 at 321.264 kb on + strand, within SM_b20318 at 321.265 kb on - strand, within SM_b20318
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 317,986 - SM_b20316 0.16 +0.1 318,212 + SM_b20316 0.38 +1.1 318,430 - SM_b20316 0.60 -0.8 318,591 + SM_b20316 0.76 -0.4 318,610 + SM_b20316 0.78 +0.3 318,649 - SM_b20316 0.82 +0.7 318,691 - SM_b20316 0.86 +0.5 318,727 - SM_b20316 0.90 +0.1 318,800 + -0.8 318,801 - -0.2 318,801 - +0.2 318,810 + -0.5 318,810 + +0.2 318,811 - +1.3 318,929 + +1.3 319,067 + +0.4 319,071 + -0.1 319,071 + -2.4 319,112 + SM_b20317 0.11 -0.8 319,113 - SM_b20317 0.11 -0.5 319,157 + SM_b20317 0.13 -0.5 319,157 + SM_b20317 0.13 -0.8 319,159 - SM_b20317 0.14 +1.5 319,227 + SM_b20317 0.18 +0.1 319,746 - SM_b20317 0.51 -0.4 319,834 + SM_b20317 0.57 +0.0 320,296 + SM_b20317 0.87 +0.3 320,297 - SM_b20317 0.87 -1.5 320,402 + -0.2 320,497 - +0.3 320,497 - +0.5 320,595 + -1.1 320,595 + -1.6 320,596 - +0.3 320,753 + SM_b20318 0.25 -0.2 320,753 + SM_b20318 0.25 -1.2 320,753 + SM_b20318 0.25 -0.1 320,753 + SM_b20318 0.25 -0.1 320,785 + SM_b20318 0.28 +0.2 320,786 - SM_b20318 0.28 -0.3 320,786 - SM_b20318 0.28 +1.9 320,786 - SM_b20318 0.28 +0.9 320,812 + SM_b20318 0.30 -0.2 320,813 - SM_b20318 0.30 -0.1 320,813 - SM_b20318 0.30 -1.0 320,873 + SM_b20318 0.36 -0.3 321,083 - SM_b20318 0.56 +0.6 321,121 + SM_b20318 0.60 +0.2 321,122 - SM_b20318 0.60 +0.1 321,122 - SM_b20318 0.60 +0.6 321,122 - SM_b20318 0.60 +0.8 321,122 - SM_b20318 0.60 +0.2 321,123 + SM_b20318 0.60 +0.3 321,123 + SM_b20318 0.60 +0.3 321,123 + -0.7 321,154 - SM_b20318 0.63 -0.5 321,158 - SM_b20318 0.64 +0.6 321,235 + SM_b20318 0.71 +0.3 321,264 + SM_b20318 0.74 +0.8 321,265 - SM_b20318 0.74 +0.1
Or see this region's nucleotide sequence