Experiment: 5-Aminovaleric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20095 and SM_b20096 are separated by 28 nucleotides SM_b20096 and SM_b20097 are separated by 1 nucleotides
SM_b20095: SM_b20095 - pyruvate oxidase, at 103,207 to 105,024
_b20095
SM_b20096: SM_b20096 - hypothetical protein, at 105,053 to 105,493
_b20096
SM_b20097: SM_b20097 - oxidoreductase, at 105,495 to 106,724
_b20097
Position (kb) 105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 104.056 kb on + strand, within SM_b20095 at 104.058 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.065 kb on + strand, within SM_b20095 at 104.352 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.470 kb on + strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.471 kb on - strand, within SM_b20095 at 104.512 kb on + strand, within SM_b20095 at 105.022 kb on + strand at 105.022 kb on + strand at 105.080 kb on - strand at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.112 kb on + strand, within SM_b20096 at 105.113 kb on - strand, within SM_b20096 at 105.146 kb on + strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.147 kb on - strand, within SM_b20096 at 105.383 kb on + strand, within SM_b20096 at 105.383 kb on + strand, within SM_b20096 at 105.479 kb on + strand at 105.480 kb on - strand at 105.491 kb on + strand at 105.492 kb on - strand at 105.518 kb on + strand at 105.519 kb on - strand at 105.519 kb on - strand at 105.740 kb on - strand, within SM_b20097 at 105.740 kb on - strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.970 kb on + strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 105.971 kb on - strand, within SM_b20097 at 106.236 kb on + strand, within SM_b20097 at 106.437 kb on + strand, within SM_b20097 at 106.473 kb on + strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097 at 106.474 kb on - strand, within SM_b20097
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric (C) remove 104,056 + SM_b20095 0.47 +1.2 104,058 + SM_b20095 0.47 -1.4 104,065 + SM_b20095 0.47 +1.8 104,065 + SM_b20095 0.47 -0.6 104,065 + SM_b20095 0.47 +0.2 104,352 + SM_b20095 0.63 +0.9 104,470 + SM_b20095 0.69 -0.3 104,470 + SM_b20095 0.69 +1.0 104,470 + SM_b20095 0.69 -0.4 104,471 - SM_b20095 0.70 -0.8 104,471 - SM_b20095 0.70 -0.3 104,471 - SM_b20095 0.70 +0.1 104,512 + SM_b20095 0.72 -0.8 105,022 + -0.2 105,022 + -0.5 105,080 - +1.0 105,112 + SM_b20096 0.13 -0.4 105,112 + SM_b20096 0.13 +0.3 105,112 + SM_b20096 0.13 -0.1 105,112 + SM_b20096 0.13 -0.6 105,112 + SM_b20096 0.13 -1.6 105,113 - SM_b20096 0.14 +1.2 105,146 + SM_b20096 0.21 -0.9 105,147 - SM_b20096 0.21 -0.7 105,147 - SM_b20096 0.21 -0.7 105,147 - SM_b20096 0.21 -0.3 105,147 - SM_b20096 0.21 -0.3 105,383 + SM_b20096 0.75 -0.0 105,383 + SM_b20096 0.75 -0.8 105,479 + -0.2 105,480 - -0.4 105,491 + +0.3 105,492 - -0.1 105,518 + -0.2 105,519 - -0.3 105,519 - -0.3 105,740 - SM_b20097 0.20 -0.3 105,740 - SM_b20097 0.20 +0.2 105,970 + SM_b20097 0.39 +0.4 105,970 + SM_b20097 0.39 +1.2 105,970 + SM_b20097 0.39 -1.5 105,970 + SM_b20097 0.39 -0.9 105,971 - SM_b20097 0.39 +0.8 105,971 - SM_b20097 0.39 -0.2 105,971 - SM_b20097 0.39 +0.4 106,236 + SM_b20097 0.60 -0.1 106,437 + SM_b20097 0.77 +0.5 106,473 + SM_b20097 0.80 +0.3 106,474 - SM_b20097 0.80 +1.0 106,474 - SM_b20097 0.80 -3.8 106,474 - SM_b20097 0.80 +0.2
Or see this region's nucleotide sequence