Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18235 and RS_RS18240 are separated by 98 nucleotides RS_RS18240 and RS_RS18245 are separated by 15 nucleotides
RS_RS18235: RS_RS18235 - crotonase, at 279,987 to 280,820
_RS18235
RS_RS18240: RS_RS18240 - salicylaldehyde dehydrogenase, at 280,919 to 282,373
_RS18240
RS_RS18245: RS_RS18245 - feruloyl-CoA synthase, at 282,389 to 284,263
_RS18245
Position (kb) 280
281
282
283 Strain fitness (log2 ratio) -1
0
1
2 at 279.996 kb on + strand at 279.997 kb on - strand at 279.997 kb on - strand at 280.210 kb on - strand, within RS_RS18235 at 280.299 kb on + strand, within RS_RS18235 at 280.299 kb on + strand, within RS_RS18235 at 280.299 kb on + strand, within RS_RS18235 at 280.300 kb on - strand, within RS_RS18235 at 280.300 kb on - strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.494 kb on + strand, within RS_RS18235 at 280.495 kb on - strand, within RS_RS18235 at 280.638 kb on + strand, within RS_RS18235 at 280.639 kb on - strand, within RS_RS18235 at 280.639 kb on - strand, within RS_RS18235 at 280.695 kb on + strand, within RS_RS18235 at 280.695 kb on + strand, within RS_RS18235 at 280.696 kb on - strand, within RS_RS18235 at 280.696 kb on - strand, within RS_RS18235 at 280.701 kb on + strand, within RS_RS18235 at 280.807 kb on - strand at 280.807 kb on - strand at 282.047 kb on + strand, within RS_RS18240 at 282.134 kb on + strand, within RS_RS18240 at 282.218 kb on - strand, within RS_RS18240 at 282.623 kb on + strand, within RS_RS18245 at 282.623 kb on + strand, within RS_RS18245 at 282.623 kb on + strand, within RS_RS18245 at 282.624 kb on - strand, within RS_RS18245 at 282.755 kb on + strand, within RS_RS18245 at 282.755 kb on + strand, within RS_RS18245 at 282.755 kb on + strand, within RS_RS18245 at 282.755 kb on + strand, within RS_RS18245 at 282.755 kb on + strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.756 kb on - strand, within RS_RS18245 at 282.771 kb on - strand, within RS_RS18245 at 282.812 kb on + strand, within RS_RS18245 at 282.812 kb on + strand, within RS_RS18245 at 282.813 kb on - strand, within RS_RS18245 at 282.827 kb on + strand, within RS_RS18245 at 282.860 kb on + strand, within RS_RS18245 at 282.860 kb on + strand, within RS_RS18245 at 282.861 kb on - strand, within RS_RS18245 at 282.861 kb on - strand, within RS_RS18245 at 283.232 kb on + strand, within RS_RS18245 at 283.232 kb on + strand, within RS_RS18245 at 283.233 kb on - strand, within RS_RS18245 at 283.233 kb on - strand, within RS_RS18245 at 283.247 kb on + strand, within RS_RS18245 at 283.250 kb on + strand, within RS_RS18245 at 283.250 kb on + strand, within RS_RS18245 at 283.251 kb on - strand, within RS_RS18245 at 283.251 kb on - strand, within RS_RS18245 at 283.328 kb on + strand, within RS_RS18245
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days remove 279,996 + +0.6 279,997 - -0.2 279,997 - -0.3 280,210 - RS_RS18235 0.27 +0.0 280,299 + RS_RS18235 0.37 +1.2 280,299 + RS_RS18235 0.37 +0.8 280,299 + RS_RS18235 0.37 +0.8 280,300 - RS_RS18235 0.38 +1.3 280,300 - RS_RS18235 0.38 -0.1 280,494 + RS_RS18235 0.61 +0.9 280,494 + RS_RS18235 0.61 +1.2 280,494 + RS_RS18235 0.61 +0.8 280,494 + RS_RS18235 0.61 +0.7 280,494 + RS_RS18235 0.61 +0.4 280,495 - RS_RS18235 0.61 +0.3 280,638 + RS_RS18235 0.78 +0.9 280,639 - RS_RS18235 0.78 -0.3 280,639 - RS_RS18235 0.78 -0.0 280,695 + RS_RS18235 0.85 +1.0 280,695 + RS_RS18235 0.85 -0.4 280,696 - RS_RS18235 0.85 -0.1 280,696 - RS_RS18235 0.85 +0.4 280,701 + RS_RS18235 0.86 +1.1 280,807 - -0.6 280,807 - +0.5 282,047 + RS_RS18240 0.78 -0.1 282,134 + RS_RS18240 0.84 -0.3 282,218 - RS_RS18240 0.89 -0.2 282,623 + RS_RS18245 0.12 -0.1 282,623 + RS_RS18245 0.12 -0.0 282,623 + RS_RS18245 0.12 -0.0 282,624 - RS_RS18245 0.13 +2.1 282,755 + RS_RS18245 0.20 +0.1 282,755 + RS_RS18245 0.20 -0.5 282,755 + RS_RS18245 0.20 +0.3 282,755 + RS_RS18245 0.20 -0.5 282,755 + RS_RS18245 0.20 -1.4 282,756 - RS_RS18245 0.20 +0.5 282,756 - RS_RS18245 0.20 -0.3 282,756 - RS_RS18245 0.20 -0.0 282,756 - RS_RS18245 0.20 +0.2 282,756 - RS_RS18245 0.20 +0.0 282,756 - RS_RS18245 0.20 -0.1 282,756 - RS_RS18245 0.20 +1.0 282,771 - RS_RS18245 0.20 -0.7 282,812 + RS_RS18245 0.23 +0.5 282,812 + RS_RS18245 0.23 -0.2 282,813 - RS_RS18245 0.23 -1.5 282,827 + RS_RS18245 0.23 +0.2 282,860 + RS_RS18245 0.25 +0.8 282,860 + RS_RS18245 0.25 -0.7 282,861 - RS_RS18245 0.25 -0.2 282,861 - RS_RS18245 0.25 +0.2 283,232 + RS_RS18245 0.45 -0.2 283,232 + RS_RS18245 0.45 -1.2 283,233 - RS_RS18245 0.45 +0.1 283,233 - RS_RS18245 0.45 -0.1 283,247 + RS_RS18245 0.46 -0.3 283,250 + RS_RS18245 0.46 -0.4 283,250 + RS_RS18245 0.46 +0.3 283,251 - RS_RS18245 0.46 +1.5 283,251 - RS_RS18245 0.46 -0.8 283,328 + RS_RS18245 0.50 +0.6
Or see this region's nucleotide sequence