Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03075

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03065 and RS_RS03070 overlap by 4 nucleotidesRS_RS03070 and RS_RS03075 are separated by 88 nucleotidesRS_RS03075 and RS_RS03080 are separated by 524 nucleotides RS_RS03065: RS_RS03065 - FAD:protein FMN transferase, at 658,277 to 659,173 _RS03065 RS_RS03070: RS_RS03070 - hypothetical protein, at 659,170 to 659,748 _RS03070 RS_RS03075: RS_RS03075 - hypothetical protein, at 659,837 to 660,409 _RS03075 RS_RS03080: RS_RS03080 - EamA/RhaT family transporter, at 660,934 to 661,947 _RS03080 Position (kb) 659 660 661Strain fitness (log2 ratio) -2 -1 0 1at 659.240 kb on - strand, within RS_RS03070at 659.240 kb on - strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.605 kb on + strand, within RS_RS03070at 659.605 kb on + strand, within RS_RS03070at 659.606 kb on - strand, within RS_RS03070at 659.608 kb on - strand, within RS_RS03070at 659.872 kb on - strandat 660.102 kb on + strand, within RS_RS03075at 660.103 kb on - strand, within RS_RS03075at 660.103 kb on - strand, within RS_RS03075at 660.147 kb on + strand, within RS_RS03075at 660.148 kb on - strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.241 kb on - strand, within RS_RS03075at 660.241 kb on - strand, within RS_RS03075at 660.295 kb on + strand, within RS_RS03075at 660.295 kb on + strand, within RS_RS03075at 660.296 kb on - strand, within RS_RS03075at 660.394 kb on + strandat 660.394 kb on + strandat 660.395 kb on - strandat 660.435 kb on - strandat 660.549 kb on + strandat 660.652 kb on + strandat 660.652 kb on + strandat 660.653 kb on - strandat 660.659 kb on + strandat 660.751 kb on + strandat 660.752 kb on - strandat 660.761 kb on + strandat 660.788 kb on + strandat 661.154 kb on + strand, within RS_RS03080at 661.154 kb on + strand, within RS_RS03080at 661.154 kb on + strand, within RS_RS03080at 661.154 kb on + strand, within RS_RS03080at 661.154 kb on + strand, within RS_RS03080at 661.155 kb on - strand, within RS_RS03080at 661.155 kb on - strand, within RS_RS03080at 661.155 kb on - strand, within RS_RS03080at 661.155 kb on - strand, within RS_RS03080at 661.155 kb on - strand, within RS_RS03080at 661.155 kb on - strand, within RS_RS03080at 661.167 kb on - strand, within RS_RS03080at 661.167 kb on - strand, within RS_RS03080at 661.183 kb on + strand, within RS_RS03080at 661.183 kb on + strand, within RS_RS03080at 661.183 kb on + strand, within RS_RS03080at 661.183 kb on + strand, within RS_RS03080at 661.183 kb on + strand, within RS_RS03080at 661.183 kb on + strand, within RS_RS03080at 661.384 kb on + strand, within RS_RS03080

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
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659,240 - RS_RS03070 0.12 -0.6
659,240 - RS_RS03070 0.12 +0.7
659,512 + RS_RS03070 0.59 +0.5
659,512 + RS_RS03070 0.59 +0.1
659,512 + RS_RS03070 0.59 +0.2
659,512 + RS_RS03070 0.59 +0.6
659,512 + RS_RS03070 0.59 -0.0
659,513 - RS_RS03070 0.59 +0.1
659,513 - RS_RS03070 0.59 -0.1
659,513 - RS_RS03070 0.59 -0.4
659,605 + RS_RS03070 0.75 +0.1
659,605 + RS_RS03070 0.75 +0.8
659,606 - RS_RS03070 0.75 +0.2
659,608 - RS_RS03070 0.76 -0.1
659,872 - +0.8
660,102 + RS_RS03075 0.46 -0.4
660,103 - RS_RS03075 0.46 +0.5
660,103 - RS_RS03075 0.46 -0.3
660,147 + RS_RS03075 0.54 +0.4
660,148 - RS_RS03075 0.54 +0.0
660,240 + RS_RS03075 0.70 +0.4
660,240 + RS_RS03075 0.70 -0.3
660,240 + RS_RS03075 0.70 +0.5
660,240 + RS_RS03075 0.70 +1.0
660,240 + RS_RS03075 0.70 -0.0
660,240 + RS_RS03075 0.70 +0.0
660,240 + RS_RS03075 0.70 -0.2
660,241 - RS_RS03075 0.71 +0.4
660,241 - RS_RS03075 0.71 -0.4
660,295 + RS_RS03075 0.80 +0.5
660,295 + RS_RS03075 0.80 +0.4
660,296 - RS_RS03075 0.80 +0.4
660,394 + +0.7
660,394 + -0.6
660,395 - -1.1
660,435 - +0.6
660,549 + -0.4
660,652 + +0.2
660,652 + +0.1
660,653 - -2.5
660,659 + -0.6
660,751 + +0.1
660,752 - +0.7
660,761 + -0.4
660,788 + -1.3
661,154 + RS_RS03080 0.22 +0.7
661,154 + RS_RS03080 0.22 -0.3
661,154 + RS_RS03080 0.22 -0.3
661,154 + RS_RS03080 0.22 -0.9
661,154 + RS_RS03080 0.22 +0.0
661,155 - RS_RS03080 0.22 +0.3
661,155 - RS_RS03080 0.22 +0.5
661,155 - RS_RS03080 0.22 +0.2
661,155 - RS_RS03080 0.22 +0.3
661,155 - RS_RS03080 0.22 +0.4
661,155 - RS_RS03080 0.22 +0.6
661,167 - RS_RS03080 0.23 -0.6
661,167 - RS_RS03080 0.23 +0.4
661,183 + RS_RS03080 0.25 -0.2
661,183 + RS_RS03080 0.25 -0.4
661,183 + RS_RS03080 0.25 -0.3
661,183 + RS_RS03080 0.25 +0.6
661,183 + RS_RS03080 0.25 -0.3
661,183 + RS_RS03080 0.25 -1.7
661,384 + RS_RS03080 0.44 +0.3

Or see this region's nucleotide sequence