Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4966 and Psyr_4967 are separated by 177 nucleotides Psyr_4967 and Psyr_4968 are separated by 152 nucleotides Psyr_4968 and Psyr_4969 are separated by 34 nucleotides Psyr_4969 and Psyr_4970 are separated by 50 nucleotides
Psyr_4966: Psyr_4966 - ImpA, N-terminal, at 5,890,348 to 5,891,442
_4966
Psyr_4967: Psyr_4967 - conserved hypothetical protein, at 5,891,620 to 5,892,045
_4967
Psyr_4968: Psyr_4968 - hypothetical protein, at 5,892,198 to 5,892,530
_4968
Psyr_4969: Psyr_4969 - PAAR, at 5,892,565 to 5,892,873
_4969
Psyr_4970: Psyr_4970 - Phospholipase D/Transphosphatidylase, at 5,892,924 to 5,894,978
_4970
Position (kb) 5892
5893 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5891.315 kb on - strand, within Psyr_4966 at 5891.315 kb on - strand, within Psyr_4966 at 5891.433 kb on + strand at 5891.434 kb on - strand at 5891.434 kb on - strand at 5891.441 kb on - strand at 5891.453 kb on + strand at 5891.466 kb on + strand at 5891.467 kb on - strand at 5891.467 kb on - strand at 5891.479 kb on - strand at 5891.520 kb on - strand at 5891.541 kb on + strand at 5891.541 kb on + strand at 5891.548 kb on - strand at 5891.559 kb on + strand at 5891.559 kb on + strand at 5891.615 kb on - strand at 5891.950 kb on - strand, within Psyr_4967 at 5891.959 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.977 kb on + strand, within Psyr_4967 at 5891.978 kb on - strand, within Psyr_4967 at 5891.983 kb on + strand, within Psyr_4967 at 5891.986 kb on + strand, within Psyr_4967 at 5891.986 kb on + strand, within Psyr_4967 at 5891.987 kb on - strand, within Psyr_4967 at 5892.119 kb on + strand at 5892.120 kb on - strand at 5892.162 kb on - strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.165 kb on + strand at 5892.166 kb on - strand at 5892.166 kb on - strand at 5892.166 kb on - strand at 5892.201 kb on + strand at 5892.201 kb on + strand at 5892.202 kb on - strand at 5892.238 kb on + strand, within Psyr_4968 at 5892.239 kb on - strand, within Psyr_4968 at 5892.303 kb on - strand, within Psyr_4968 at 5892.303 kb on - strand, within Psyr_4968 at 5892.331 kb on + strand, within Psyr_4968 at 5892.332 kb on - strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.336 kb on + strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.337 kb on - strand, within Psyr_4968 at 5892.341 kb on - strand, within Psyr_4968 at 5892.376 kb on - strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.420 kb on + strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.421 kb on - strand, within Psyr_4968 at 5892.494 kb on - strand, within Psyr_4968 at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.522 kb on + strand at 5892.523 kb on - strand at 5892.523 kb on - strand at 5892.526 kb on + strand at 5892.526 kb on + strand at 5892.526 kb on + strand at 5892.527 kb on - strand at 5892.527 kb on - strand at 5892.563 kb on - strand at 5892.563 kb on - strand at 5892.563 kb on - strand at 5892.604 kb on + strand, within Psyr_4969 at 5892.604 kb on + strand, within Psyr_4969 at 5892.605 kb on - strand, within Psyr_4969 at 5892.605 kb on - strand, within Psyr_4969 at 5892.605 kb on - strand, within Psyr_4969 at 5892.619 kb on - strand, within Psyr_4969 at 5892.619 kb on - strand, within Psyr_4969 at 5892.648 kb on + strand, within Psyr_4969 at 5892.648 kb on + strand, within Psyr_4969 at 5892.648 kb on + strand, within Psyr_4969 at 5892.649 kb on - strand, within Psyr_4969 at 5892.649 kb on - strand, within Psyr_4969 at 5892.695 kb on + strand, within Psyr_4969 at 5892.696 kb on - strand, within Psyr_4969 at 5892.748 kb on - strand, within Psyr_4969 at 5892.871 kb on + strand at 5892.871 kb on + strand at 5892.871 kb on + strand at 5892.872 kb on - strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.888 kb on + strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5892.889 kb on - strand at 5893.031 kb on + strand at 5893.032 kb on - strand at 5893.032 kb on - strand at 5893.032 kb on - strand at 5893.076 kb on - strand at 5893.077 kb on + strand at 5893.077 kb on + strand at 5893.078 kb on - strand at 5893.078 kb on - strand at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.143 kb on + strand, within Psyr_4970 at 5893.144 kb on - strand, within Psyr_4970 at 5893.144 kb on - strand, within Psyr_4970 at 5893.144 kb on - strand, within Psyr_4970 at 5893.149 kb on - strand, within Psyr_4970 at 5893.175 kb on + strand, within Psyr_4970 at 5893.176 kb on - strand, within Psyr_4970 at 5893.176 kb on - strand, within Psyr_4970 at 5893.244 kb on + strand, within Psyr_4970 at 5893.244 kb on + strand, within Psyr_4970 at 5893.245 kb on - strand, within Psyr_4970 at 5893.340 kb on + strand, within Psyr_4970 at 5893.351 kb on + strand, within Psyr_4970 at 5893.366 kb on + strand, within Psyr_4970 at 5893.367 kb on - strand, within Psyr_4970 at 5893.446 kb on + strand, within Psyr_4970 at 5893.468 kb on - strand, within Psyr_4970
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 5,891,315 - Psyr_4966 0.88 -0.7 5,891,315 - Psyr_4966 0.88 +0.8 5,891,433 + -0.3 5,891,434 - +1.0 5,891,434 - -1.2 5,891,441 - +1.0 5,891,453 + -0.8 5,891,466 + +0.2 5,891,467 - +0.2 5,891,467 - +0.2 5,891,479 - +1.2 5,891,520 - -1.7 5,891,541 + -1.5 5,891,541 + -0.1 5,891,548 - -0.2 5,891,559 + -0.8 5,891,559 + -0.2 5,891,615 - +0.8 5,891,950 - Psyr_4967 0.77 -0.5 5,891,959 + Psyr_4967 0.80 +0.7 5,891,977 + Psyr_4967 0.84 -2.6 5,891,977 + Psyr_4967 0.84 +0.2 5,891,977 + Psyr_4967 0.84 -0.2 5,891,978 - Psyr_4967 0.84 -1.1 5,891,983 + Psyr_4967 0.85 -1.3 5,891,986 + Psyr_4967 0.86 -0.9 5,891,986 + Psyr_4967 0.86 -1.2 5,891,987 - Psyr_4967 0.86 -1.8 5,892,119 + -1.5 5,892,120 - -0.8 5,892,162 - +1.6 5,892,165 + -1.3 5,892,165 + +1.2 5,892,165 + -0.2 5,892,165 + -2.0 5,892,166 - -0.5 5,892,166 - -0.4 5,892,166 - -0.2 5,892,201 + -1.0 5,892,201 + +0.5 5,892,202 - +1.1 5,892,238 + Psyr_4968 0.12 +0.1 5,892,239 - Psyr_4968 0.12 +0.5 5,892,303 - Psyr_4968 0.32 +0.6 5,892,303 - Psyr_4968 0.32 -1.6 5,892,331 + Psyr_4968 0.40 +0.2 5,892,332 - Psyr_4968 0.40 -1.3 5,892,336 + Psyr_4968 0.41 +0.3 5,892,336 + Psyr_4968 0.41 +0.2 5,892,336 + Psyr_4968 0.41 -0.3 5,892,337 - Psyr_4968 0.42 +0.2 5,892,337 - Psyr_4968 0.42 -0.3 5,892,337 - Psyr_4968 0.42 -0.0 5,892,337 - Psyr_4968 0.42 -0.7 5,892,341 - Psyr_4968 0.43 +1.2 5,892,376 - Psyr_4968 0.53 +2.4 5,892,420 + Psyr_4968 0.67 +0.9 5,892,420 + Psyr_4968 0.67 -2.7 5,892,420 + Psyr_4968 0.67 +0.4 5,892,421 - Psyr_4968 0.67 +1.9 5,892,421 - Psyr_4968 0.67 +3.2 5,892,421 - Psyr_4968 0.67 -0.3 5,892,421 - Psyr_4968 0.67 -0.1 5,892,421 - Psyr_4968 0.67 -0.1 5,892,494 - Psyr_4968 0.89 +1.9 5,892,522 + -2.1 5,892,522 + +0.6 5,892,522 + +0.5 5,892,522 + -1.0 5,892,522 + -1.5 5,892,522 + +0.5 5,892,522 + -0.3 5,892,523 - +0.2 5,892,523 - -0.6 5,892,526 + -0.8 5,892,526 + +0.1 5,892,526 + +0.2 5,892,527 - -0.3 5,892,527 - -0.5 5,892,563 - -0.1 5,892,563 - +0.7 5,892,563 - +0.1 5,892,604 + Psyr_4969 0.13 -0.4 5,892,604 + Psyr_4969 0.13 -0.8 5,892,605 - Psyr_4969 0.13 +0.6 5,892,605 - Psyr_4969 0.13 -0.3 5,892,605 - Psyr_4969 0.13 -1.8 5,892,619 - Psyr_4969 0.17 +1.5 5,892,619 - Psyr_4969 0.17 +0.2 5,892,648 + Psyr_4969 0.27 -0.2 5,892,648 + Psyr_4969 0.27 +0.0 5,892,648 + Psyr_4969 0.27 -0.2 5,892,649 - Psyr_4969 0.27 +1.0 5,892,649 - Psyr_4969 0.27 -1.3 5,892,695 + Psyr_4969 0.42 +0.5 5,892,696 - Psyr_4969 0.42 -0.9 5,892,748 - Psyr_4969 0.59 +1.8 5,892,871 + +3.2 5,892,871 + +2.2 5,892,871 + -2.5 5,892,872 - +0.4 5,892,888 + -0.4 5,892,888 + -1.6 5,892,888 + -1.3 5,892,888 + +0.1 5,892,888 + -0.3 5,892,888 + +1.7 5,892,888 + -1.1 5,892,888 + -2.1 5,892,888 + +0.6 5,892,889 - -0.3 5,892,889 - +2.2 5,892,889 - +0.0 5,892,889 - -1.2 5,892,889 - +0.3 5,892,889 - -0.6 5,892,889 - -2.8 5,893,031 + -1.8 5,893,032 - -0.4 5,893,032 - +0.4 5,893,032 - +1.2 5,893,076 - +0.6 5,893,077 + -0.3 5,893,077 + +0.6 5,893,078 - +0.1 5,893,078 - -0.1 5,893,143 + Psyr_4970 0.11 +0.6 5,893,143 + Psyr_4970 0.11 +0.0 5,893,143 + Psyr_4970 0.11 +0.6 5,893,143 + Psyr_4970 0.11 -0.3 5,893,143 + Psyr_4970 0.11 +1.0 5,893,144 - Psyr_4970 0.11 -1.1 5,893,144 - Psyr_4970 0.11 -1.6 5,893,144 - Psyr_4970 0.11 -0.5 5,893,149 - Psyr_4970 0.11 +0.5 5,893,175 + Psyr_4970 0.12 -0.1 5,893,176 - Psyr_4970 0.12 +0.3 5,893,176 - Psyr_4970 0.12 -1.7 5,893,244 + Psyr_4970 0.16 -0.5 5,893,244 + Psyr_4970 0.16 +1.4 5,893,245 - Psyr_4970 0.16 +0.2 5,893,340 + Psyr_4970 0.20 +0.3 5,893,351 + Psyr_4970 0.21 -2.7 5,893,366 + Psyr_4970 0.22 +2.2 5,893,367 - Psyr_4970 0.22 +1.1 5,893,446 + Psyr_4970 0.25 +0.3 5,893,468 - Psyr_4970 0.26 +0.3
Or see this region's nucleotide sequence