Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4866 and Psyr_4867 are separated by 68 nucleotides Psyr_4867 and Psyr_4868 are separated by 594 nucleotides
Psyr_4866: Psyr_4866 - Aminotransferase class-III, at 5,774,961 to 5,776,325
_4866
Psyr_4867: Psyr_4867 - L-glutamine synthetase, at 5,776,394 to 5,777,752
_4867
Psyr_4868: Psyr_4868 - glutamate--putrescine ligase, at 5,778,347 to 5,779,723
_4868
Position (kb) 5776
5777
5778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5775.438 kb on + strand, within Psyr_4866 at 5775.439 kb on - strand, within Psyr_4866 at 5775.439 kb on - strand, within Psyr_4866 at 5775.443 kb on - strand, within Psyr_4866 at 5775.443 kb on - strand, within Psyr_4866 at 5775.493 kb on + strand, within Psyr_4866 at 5775.494 kb on - strand, within Psyr_4866 at 5775.494 kb on - strand, within Psyr_4866 at 5775.521 kb on + strand, within Psyr_4866 at 5775.602 kb on - strand, within Psyr_4866 at 5775.763 kb on + strand, within Psyr_4866 at 5775.764 kb on - strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.820 kb on + strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5775.821 kb on - strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.069 kb on + strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.070 kb on - strand, within Psyr_4866 at 5776.072 kb on + strand, within Psyr_4866 at 5776.073 kb on - strand, within Psyr_4866 at 5776.195 kb on + strand at 5776.195 kb on + strand at 5776.195 kb on + strand at 5776.249 kb on + strand at 5776.674 kb on + strand, within Psyr_4867 at 5776.674 kb on + strand, within Psyr_4867 at 5776.674 kb on + strand, within Psyr_4867 at 5776.930 kb on + strand, within Psyr_4867 at 5776.930 kb on + strand, within Psyr_4867 at 5776.930 kb on + strand, within Psyr_4867 at 5777.153 kb on - strand, within Psyr_4867 at 5777.187 kb on + strand, within Psyr_4867 at 5777.187 kb on + strand, within Psyr_4867 at 5777.188 kb on - strand, within Psyr_4867 at 5777.188 kb on - strand, within Psyr_4867 at 5777.188 kb on - strand, within Psyr_4867 at 5777.322 kb on + strand, within Psyr_4867 at 5777.323 kb on - strand, within Psyr_4867 at 5777.436 kb on + strand, within Psyr_4867 at 5777.436 kb on + strand, within Psyr_4867 at 5777.436 kb on + strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.437 kb on - strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.487 kb on + strand, within Psyr_4867 at 5777.488 kb on - strand, within Psyr_4867 at 5777.488 kb on - strand, within Psyr_4867 at 5777.488 kb on - strand, within Psyr_4867 at 5777.547 kb on + strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.548 kb on - strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.550 kb on + strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.551 kb on - strand, within Psyr_4867 at 5777.554 kb on + strand, within Psyr_4867 at 5777.555 kb on - strand, within Psyr_4867 at 5777.564 kb on + strand, within Psyr_4867 at 5777.565 kb on - strand, within Psyr_4867 at 5777.565 kb on - strand, within Psyr_4867 at 5777.565 kb on - strand, within Psyr_4867 at 5777.568 kb on + strand, within Psyr_4867 at 5777.568 kb on + strand, within Psyr_4867 at 5777.568 kb on + strand, within Psyr_4867 at 5777.569 kb on - strand, within Psyr_4867 at 5777.569 kb on - strand, within Psyr_4867 at 5777.569 kb on - strand, within Psyr_4867 at 5777.746 kb on + strand at 5777.746 kb on + strand at 5777.747 kb on - strand at 5777.747 kb on - strand at 5777.747 kb on - strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.752 kb on + strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.753 kb on - strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.756 kb on + strand at 5777.757 kb on - strand at 5777.757 kb on - strand at 5777.769 kb on + strand at 5777.770 kb on - strand at 5777.770 kb on - strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.818 kb on + strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.819 kb on - strand at 5777.909 kb on + strand at 5777.911 kb on + strand at 5777.911 kb on + strand at 5777.912 kb on - strand at 5777.917 kb on + strand at 5777.918 kb on - strand at 5777.918 kb on - strand at 5778.027 kb on + strand at 5778.169 kb on + strand at 5778.169 kb on + strand at 5778.170 kb on - strand at 5778.170 kb on - strand at 5778.215 kb on + strand at 5778.215 kb on + strand at 5778.216 kb on - strand at 5778.233 kb on + strand at 5778.234 kb on - strand at 5778.419 kb on + strand at 5778.419 kb on + strand at 5778.419 kb on + strand at 5778.420 kb on - strand at 5778.442 kb on + strand at 5778.442 kb on + strand at 5778.442 kb on + strand at 5778.443 kb on - strand at 5778.443 kb on - strand at 5778.497 kb on + strand, within Psyr_4868 at 5778.498 kb on - strand, within Psyr_4868 at 5778.528 kb on + strand, within Psyr_4868 at 5778.528 kb on + strand, within Psyr_4868 at 5778.529 kb on - strand, within Psyr_4868 at 5778.541 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.723 kb on + strand, within Psyr_4868 at 5778.724 kb on - strand, within Psyr_4868 at 5778.724 kb on - strand, within Psyr_4868
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 5,775,438 + Psyr_4866 0.35 -0.4 5,775,439 - Psyr_4866 0.35 -1.2 5,775,439 - Psyr_4866 0.35 +0.5 5,775,443 - Psyr_4866 0.35 -0.4 5,775,443 - Psyr_4866 0.35 -1.8 5,775,493 + Psyr_4866 0.39 +0.2 5,775,494 - Psyr_4866 0.39 +0.6 5,775,494 - Psyr_4866 0.39 +0.1 5,775,521 + Psyr_4866 0.41 +0.2 5,775,602 - Psyr_4866 0.47 -0.9 5,775,763 + Psyr_4866 0.59 +1.3 5,775,764 - Psyr_4866 0.59 -1.2 5,775,820 + Psyr_4866 0.63 +1.2 5,775,820 + Psyr_4866 0.63 +0.4 5,775,820 + Psyr_4866 0.63 -0.0 5,775,820 + Psyr_4866 0.63 -0.4 5,775,820 + Psyr_4866 0.63 -0.2 5,775,820 + Psyr_4866 0.63 -0.2 5,775,820 + Psyr_4866 0.63 -0.8 5,775,820 + Psyr_4866 0.63 -0.0 5,775,820 + Psyr_4866 0.63 -0.7 5,775,820 + Psyr_4866 0.63 -4.1 5,775,820 + Psyr_4866 0.63 +0.9 5,775,820 + Psyr_4866 0.63 -1.4 5,775,821 - Psyr_4866 0.63 -0.6 5,775,821 - Psyr_4866 0.63 +0.1 5,775,821 - Psyr_4866 0.63 -0.6 5,775,821 - Psyr_4866 0.63 +0.7 5,775,821 - Psyr_4866 0.63 -1.0 5,775,821 - Psyr_4866 0.63 +0.7 5,775,821 - Psyr_4866 0.63 +0.1 5,775,821 - Psyr_4866 0.63 +0.3 5,775,821 - Psyr_4866 0.63 +1.1 5,775,821 - Psyr_4866 0.63 -0.4 5,775,821 - Psyr_4866 0.63 -0.7 5,775,821 - Psyr_4866 0.63 +3.1 5,776,069 + Psyr_4866 0.81 +0.1 5,776,069 + Psyr_4866 0.81 +0.5 5,776,069 + Psyr_4866 0.81 -0.4 5,776,069 + Psyr_4866 0.81 +0.7 5,776,069 + Psyr_4866 0.81 +0.3 5,776,069 + Psyr_4866 0.81 +2.2 5,776,069 + Psyr_4866 0.81 -1.8 5,776,070 - Psyr_4866 0.81 -0.4 5,776,070 - Psyr_4866 0.81 +1.0 5,776,070 - Psyr_4866 0.81 +1.2 5,776,070 - Psyr_4866 0.81 +0.3 5,776,070 - Psyr_4866 0.81 +0.8 5,776,072 + Psyr_4866 0.81 +0.1 5,776,073 - Psyr_4866 0.81 +0.9 5,776,195 + -0.1 5,776,195 + -0.4 5,776,195 + -0.4 5,776,249 + -0.8 5,776,674 + Psyr_4867 0.21 +0.4 5,776,674 + Psyr_4867 0.21 -0.9 5,776,674 + Psyr_4867 0.21 -0.6 5,776,930 + Psyr_4867 0.39 -0.2 5,776,930 + Psyr_4867 0.39 -1.9 5,776,930 + Psyr_4867 0.39 -0.2 5,777,153 - Psyr_4867 0.56 -0.5 5,777,187 + Psyr_4867 0.58 -0.1 5,777,187 + Psyr_4867 0.58 -1.4 5,777,188 - Psyr_4867 0.58 +0.0 5,777,188 - Psyr_4867 0.58 -1.4 5,777,188 - Psyr_4867 0.58 -1.3 5,777,322 + Psyr_4867 0.68 +0.1 5,777,323 - Psyr_4867 0.68 -1.5 5,777,436 + Psyr_4867 0.77 -0.4 5,777,436 + Psyr_4867 0.77 +0.7 5,777,436 + Psyr_4867 0.77 -0.0 5,777,437 - Psyr_4867 0.77 +0.5 5,777,437 - Psyr_4867 0.77 -0.9 5,777,437 - Psyr_4867 0.77 +0.9 5,777,437 - Psyr_4867 0.77 +0.7 5,777,437 - Psyr_4867 0.77 -0.1 5,777,437 - Psyr_4867 0.77 -2.7 5,777,487 + Psyr_4867 0.80 -0.3 5,777,487 + Psyr_4867 0.80 -0.7 5,777,487 + Psyr_4867 0.80 +0.2 5,777,487 + Psyr_4867 0.80 -0.2 5,777,487 + Psyr_4867 0.80 -0.7 5,777,487 + Psyr_4867 0.80 +0.3 5,777,487 + Psyr_4867 0.80 +0.8 5,777,488 - Psyr_4867 0.81 -1.4 5,777,488 - Psyr_4867 0.81 -0.5 5,777,488 - Psyr_4867 0.81 -2.9 5,777,547 + Psyr_4867 0.85 +1.0 5,777,548 - Psyr_4867 0.85 -1.9 5,777,548 - Psyr_4867 0.85 +1.7 5,777,548 - Psyr_4867 0.85 +1.4 5,777,548 - Psyr_4867 0.85 -0.9 5,777,550 + Psyr_4867 0.85 +2.0 5,777,550 + Psyr_4867 0.85 -1.2 5,777,550 + Psyr_4867 0.85 +0.3 5,777,550 + Psyr_4867 0.85 -2.1 5,777,550 + Psyr_4867 0.85 +1.2 5,777,550 + Psyr_4867 0.85 -0.4 5,777,550 + Psyr_4867 0.85 -0.2 5,777,551 - Psyr_4867 0.85 +1.5 5,777,551 - Psyr_4867 0.85 -1.9 5,777,551 - Psyr_4867 0.85 -0.0 5,777,551 - Psyr_4867 0.85 +0.4 5,777,551 - Psyr_4867 0.85 +0.6 5,777,551 - Psyr_4867 0.85 -1.9 5,777,551 - Psyr_4867 0.85 -0.1 5,777,551 - Psyr_4867 0.85 -0.8 5,777,551 - Psyr_4867 0.85 +0.9 5,777,551 - Psyr_4867 0.85 -0.8 5,777,551 - Psyr_4867 0.85 +0.7 5,777,551 - Psyr_4867 0.85 -0.5 5,777,554 + Psyr_4867 0.85 +0.1 5,777,555 - Psyr_4867 0.85 -1.5 5,777,564 + Psyr_4867 0.86 +0.3 5,777,565 - Psyr_4867 0.86 -1.5 5,777,565 - Psyr_4867 0.86 +1.0 5,777,565 - Psyr_4867 0.86 +1.2 5,777,568 + Psyr_4867 0.86 +0.1 5,777,568 + Psyr_4867 0.86 +0.1 5,777,568 + Psyr_4867 0.86 -2.8 5,777,569 - Psyr_4867 0.86 -0.6 5,777,569 - Psyr_4867 0.86 -0.7 5,777,569 - Psyr_4867 0.86 -1.2 5,777,746 + -0.3 5,777,746 + -0.7 5,777,747 - -1.5 5,777,747 - +0.2 5,777,747 - -0.3 5,777,752 + -0.5 5,777,752 + +0.6 5,777,752 + -0.3 5,777,752 + -2.0 5,777,752 + -1.0 5,777,752 + -0.2 5,777,752 + +0.3 5,777,752 + -0.9 5,777,752 + -0.7 5,777,752 + +0.3 5,777,753 - +0.1 5,777,753 - +0.7 5,777,753 - -1.0 5,777,753 - +0.6 5,777,753 - +1.2 5,777,753 - +0.6 5,777,753 - +3.5 5,777,753 - +1.2 5,777,756 + -1.3 5,777,756 + -1.6 5,777,756 + +0.6 5,777,756 + -0.4 5,777,756 + -1.4 5,777,756 + -0.4 5,777,757 - -0.6 5,777,757 - -0.3 5,777,769 + -0.1 5,777,770 - +0.9 5,777,770 - -1.1 5,777,818 + +1.3 5,777,818 + -0.6 5,777,818 + -0.3 5,777,818 + +0.9 5,777,818 + +0.2 5,777,818 + -1.1 5,777,819 - +0.7 5,777,819 - -0.1 5,777,819 - +0.6 5,777,819 - -0.4 5,777,819 - +1.5 5,777,819 - +1.1 5,777,819 - +1.1 5,777,819 - +0.5 5,777,819 - +4.1 5,777,819 - +0.6 5,777,819 - +1.8 5,777,819 - +1.2 5,777,819 - -0.3 5,777,819 - -1.5 5,777,909 + +1.4 5,777,911 + -0.9 5,777,911 + +1.2 5,777,912 - -0.5 5,777,917 + -0.6 5,777,918 - +0.1 5,777,918 - -2.5 5,778,027 + +0.4 5,778,169 + +0.6 5,778,169 + -2.5 5,778,170 - +1.5 5,778,170 - -2.2 5,778,215 + +2.4 5,778,215 + -0.3 5,778,216 - -0.2 5,778,233 + +0.0 5,778,234 - +0.2 5,778,419 + -1.1 5,778,419 + -0.4 5,778,419 + -1.2 5,778,420 - +0.4 5,778,442 + -0.9 5,778,442 + +0.0 5,778,442 + -0.4 5,778,443 - -3.0 5,778,443 - -0.4 5,778,497 + Psyr_4868 0.11 +1.2 5,778,498 - Psyr_4868 0.11 +1.4 5,778,528 + Psyr_4868 0.13 +0.1 5,778,528 + Psyr_4868 0.13 +1.0 5,778,529 - Psyr_4868 0.13 -0.3 5,778,541 + Psyr_4868 0.14 +0.4 5,778,723 + Psyr_4868 0.27 +0.9 5,778,723 + Psyr_4868 0.27 +1.4 5,778,723 + Psyr_4868 0.27 -0.8 5,778,723 + Psyr_4868 0.27 -0.7 5,778,723 + Psyr_4868 0.27 +0.2 5,778,724 - Psyr_4868 0.27 +1.0 5,778,724 - Psyr_4868 0.27 +0.2
Or see this region's nucleotide sequence