Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4822 and Psyr_4823 are separated by 288 nucleotides Psyr_4823 and Psyr_4824 are separated by 81 nucleotides
Psyr_4822: Psyr_4822 - Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I), at 5,718,853 to 5,720,289
_4822
Psyr_4823: Psyr_4823 - Aldo/keto reductase, at 5,720,578 to 5,721,615
_4823
Psyr_4824: Psyr_4824 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,721,697 to 5,722,632
_4824
Position (kb) 5720
5721
5722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5719.894 kb on + strand, within Psyr_4822 at 5719.894 kb on + strand, within Psyr_4822 at 5719.895 kb on - strand, within Psyr_4822 at 5719.895 kb on - strand, within Psyr_4822 at 5719.895 kb on - strand, within Psyr_4822 at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.295 kb on + strand at 5720.296 kb on - strand at 5720.296 kb on - strand at 5720.296 kb on - strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.297 kb on + strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.298 kb on - strand at 5720.316 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.337 kb on + strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.338 kb on - strand at 5720.400 kb on + strand at 5720.401 kb on - strand at 5720.504 kb on - strand at 5720.504 kb on - strand at 5720.504 kb on - strand at 5720.507 kb on - strand at 5720.524 kb on + strand at 5720.524 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.528 kb on + strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.529 kb on - strand at 5720.565 kb on - strand at 5720.565 kb on - strand at 5720.915 kb on + strand, within Psyr_4823 at 5720.915 kb on + strand, within Psyr_4823 at 5720.915 kb on + strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.916 kb on - strand, within Psyr_4823 at 5720.949 kb on + strand, within Psyr_4823 at 5720.982 kb on + strand, within Psyr_4823 at 5721.026 kb on + strand, within Psyr_4823 at 5721.026 kb on + strand, within Psyr_4823 at 5721.027 kb on - strand, within Psyr_4823 at 5721.027 kb on - strand, within Psyr_4823 at 5721.114 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.122 kb on + strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.123 kb on - strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.206 kb on + strand, within Psyr_4823 at 5721.207 kb on - strand, within Psyr_4823 at 5721.207 kb on - strand, within Psyr_4823 at 5721.221 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.269 kb on + strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.270 kb on - strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.273 kb on + strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.274 kb on - strand, within Psyr_4823 at 5721.419 kb on + strand, within Psyr_4823 at 5721.419 kb on + strand, within Psyr_4823 at 5721.419 kb on + strand, within Psyr_4823 at 5721.420 kb on - strand, within Psyr_4823 at 5721.572 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.608 kb on + strand at 5721.609 kb on - strand at 5721.609 kb on - strand at 5721.609 kb on - strand at 5721.609 kb on - strand at 5721.823 kb on + strand, within Psyr_4824 at 5721.842 kb on + strand, within Psyr_4824 at 5721.843 kb on - strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.886 kb on + strand, within Psyr_4824 at 5721.887 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5721.895 kb on - strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.001 kb on + strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.002 kb on - strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.076 kb on + strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.077 kb on - strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.079 kb on + strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.080 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.152 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.165 kb on - strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.212 kb on + strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.213 kb on - strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.337 kb on + strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824 at 5722.338 kb on - strand, within Psyr_4824
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 5,719,894 + Psyr_4822 0.72 +0.2 5,719,894 + Psyr_4822 0.72 -0.1 5,719,895 - Psyr_4822 0.73 -1.2 5,719,895 - Psyr_4822 0.73 -0.2 5,719,895 - Psyr_4822 0.73 -1.7 5,720,295 + -0.1 5,720,295 + -0.5 5,720,295 + -0.4 5,720,295 + -1.4 5,720,295 + -0.7 5,720,296 - +0.1 5,720,296 - -3.0 5,720,296 - +0.7 5,720,297 + +0.3 5,720,297 + +0.4 5,720,297 + -0.0 5,720,297 + +0.7 5,720,297 + +1.5 5,720,297 + +0.3 5,720,297 + +0.9 5,720,297 + -0.2 5,720,297 + -0.5 5,720,297 + -0.8 5,720,297 + -0.7 5,720,297 + -0.3 5,720,297 + +0.2 5,720,297 + +0.8 5,720,298 - -0.5 5,720,298 - -0.2 5,720,298 - +0.1 5,720,298 - +0.7 5,720,298 - +0.7 5,720,298 - -0.6 5,720,298 - +1.6 5,720,298 - -1.1 5,720,298 - +0.4 5,720,298 - +0.9 5,720,298 - -0.6 5,720,298 - +1.8 5,720,298 - -0.2 5,720,298 - +0.2 5,720,298 - -0.4 5,720,298 - -2.2 5,720,316 + +0.4 5,720,337 + -1.1 5,720,337 + -0.6 5,720,337 + -0.7 5,720,337 + +0.6 5,720,337 + +3.8 5,720,337 + -0.2 5,720,337 + -0.8 5,720,337 + +0.4 5,720,338 - -1.2 5,720,338 - +1.2 5,720,338 - +0.6 5,720,338 - +1.1 5,720,338 - -0.8 5,720,338 - -2.9 5,720,338 - +0.6 5,720,338 - -0.1 5,720,338 - -0.8 5,720,400 + +1.2 5,720,401 - +0.9 5,720,504 - -0.1 5,720,504 - -0.2 5,720,504 - +0.4 5,720,507 - +0.1 5,720,524 + -1.1 5,720,524 + -1.0 5,720,528 + -2.6 5,720,528 + -0.8 5,720,528 + -0.3 5,720,528 + +1.2 5,720,528 + +3.4 5,720,528 + -0.8 5,720,528 + -1.1 5,720,529 - +0.6 5,720,529 - +1.3 5,720,529 - +0.7 5,720,529 - -0.8 5,720,529 - -1.0 5,720,529 - +0.1 5,720,529 - +0.6 5,720,529 - +3.5 5,720,529 - +0.4 5,720,529 - +0.2 5,720,529 - -0.4 5,720,529 - +0.4 5,720,529 - +0.8 5,720,565 - -0.8 5,720,565 - +2.1 5,720,915 + Psyr_4823 0.32 -1.0 5,720,915 + Psyr_4823 0.32 -1.7 5,720,915 + Psyr_4823 0.32 -0.4 5,720,916 - Psyr_4823 0.33 +0.4 5,720,916 - Psyr_4823 0.33 +1.2 5,720,916 - Psyr_4823 0.33 +0.9 5,720,916 - Psyr_4823 0.33 +0.9 5,720,916 - Psyr_4823 0.33 -1.0 5,720,949 + Psyr_4823 0.36 +1.2 5,720,982 + Psyr_4823 0.39 -1.5 5,721,026 + Psyr_4823 0.43 -0.4 5,721,026 + Psyr_4823 0.43 -0.7 5,721,027 - Psyr_4823 0.43 -1.3 5,721,027 - Psyr_4823 0.43 +1.5 5,721,114 + Psyr_4823 0.52 -0.5 5,721,122 + Psyr_4823 0.52 +1.8 5,721,122 + Psyr_4823 0.52 +2.0 5,721,122 + Psyr_4823 0.52 -0.3 5,721,122 + Psyr_4823 0.52 +0.2 5,721,122 + Psyr_4823 0.52 +0.6 5,721,122 + Psyr_4823 0.52 -0.5 5,721,122 + Psyr_4823 0.52 +0.1 5,721,122 + Psyr_4823 0.52 -0.4 5,721,122 + Psyr_4823 0.52 -0.0 5,721,122 + Psyr_4823 0.52 +1.2 5,721,122 + Psyr_4823 0.52 -1.0 5,721,122 + Psyr_4823 0.52 +0.2 5,721,123 - Psyr_4823 0.53 -0.6 5,721,123 - Psyr_4823 0.53 +1.1 5,721,123 - Psyr_4823 0.53 +0.8 5,721,206 + Psyr_4823 0.61 -0.7 5,721,206 + Psyr_4823 0.61 +0.0 5,721,206 + Psyr_4823 0.61 -0.8 5,721,206 + Psyr_4823 0.61 +0.2 5,721,207 - Psyr_4823 0.61 +1.8 5,721,207 - Psyr_4823 0.61 +0.9 5,721,221 + Psyr_4823 0.62 -0.5 5,721,269 + Psyr_4823 0.67 +1.5 5,721,269 + Psyr_4823 0.67 +1.4 5,721,269 + Psyr_4823 0.67 +0.3 5,721,269 + Psyr_4823 0.67 -0.4 5,721,269 + Psyr_4823 0.67 +0.5 5,721,269 + Psyr_4823 0.67 +1.4 5,721,269 + Psyr_4823 0.67 +1.0 5,721,269 + Psyr_4823 0.67 -1.6 5,721,269 + Psyr_4823 0.67 -2.2 5,721,269 + Psyr_4823 0.67 -0.1 5,721,269 + Psyr_4823 0.67 -0.2 5,721,270 - Psyr_4823 0.67 -1.4 5,721,270 - Psyr_4823 0.67 -0.2 5,721,270 - Psyr_4823 0.67 +1.1 5,721,270 - Psyr_4823 0.67 +0.5 5,721,273 + Psyr_4823 0.67 +2.5 5,721,273 + Psyr_4823 0.67 +0.4 5,721,273 + Psyr_4823 0.67 +2.8 5,721,274 - Psyr_4823 0.67 +1.0 5,721,274 - Psyr_4823 0.67 +1.0 5,721,274 - Psyr_4823 0.67 -2.1 5,721,274 - Psyr_4823 0.67 -1.1 5,721,274 - Psyr_4823 0.67 -0.8 5,721,419 + Psyr_4823 0.81 +0.3 5,721,419 + Psyr_4823 0.81 -0.7 5,721,419 + Psyr_4823 0.81 -0.4 5,721,420 - Psyr_4823 0.81 -2.0 5,721,572 + +0.9 5,721,608 + +0.8 5,721,608 + +2.2 5,721,608 + +0.4 5,721,608 + -0.2 5,721,608 + -0.7 5,721,608 + +0.6 5,721,608 + +1.0 5,721,608 + -1.0 5,721,608 + -1.1 5,721,608 + +2.4 5,721,608 + +0.9 5,721,608 + -0.4 5,721,608 + -0.3 5,721,609 - -0.5 5,721,609 - -0.1 5,721,609 - +0.1 5,721,609 - -1.1 5,721,823 + Psyr_4824 0.13 +0.4 5,721,842 + Psyr_4824 0.15 +1.2 5,721,843 - Psyr_4824 0.16 +0.3 5,721,886 + Psyr_4824 0.20 +0.8 5,721,886 + Psyr_4824 0.20 -1.0 5,721,887 - Psyr_4824 0.20 -0.4 5,721,895 - Psyr_4824 0.21 +1.0 5,721,895 - Psyr_4824 0.21 +0.7 5,722,001 + Psyr_4824 0.32 -0.6 5,722,001 + Psyr_4824 0.32 -0.3 5,722,001 + Psyr_4824 0.32 +0.5 5,722,001 + Psyr_4824 0.32 -1.5 5,722,002 - Psyr_4824 0.33 +1.2 5,722,002 - Psyr_4824 0.33 +0.4 5,722,002 - Psyr_4824 0.33 +2.2 5,722,002 - Psyr_4824 0.33 -1.2 5,722,076 + Psyr_4824 0.40 -0.0 5,722,076 + Psyr_4824 0.40 +0.3 5,722,076 + Psyr_4824 0.40 -3.4 5,722,076 + Psyr_4824 0.40 +0.9 5,722,076 + Psyr_4824 0.40 +1.6 5,722,076 + Psyr_4824 0.40 +0.1 5,722,077 - Psyr_4824 0.41 -0.6 5,722,077 - Psyr_4824 0.41 +0.7 5,722,077 - Psyr_4824 0.41 +0.8 5,722,079 + Psyr_4824 0.41 -0.7 5,722,079 + Psyr_4824 0.41 +1.2 5,722,079 + Psyr_4824 0.41 +0.1 5,722,079 + Psyr_4824 0.41 -0.9 5,722,080 - Psyr_4824 0.41 +0.3 5,722,080 - Psyr_4824 0.41 +0.6 5,722,152 - Psyr_4824 0.49 -0.6 5,722,152 - Psyr_4824 0.49 -2.0 5,722,165 - Psyr_4824 0.50 +0.6 5,722,165 - Psyr_4824 0.50 +0.3 5,722,212 + Psyr_4824 0.55 +0.7 5,722,212 + Psyr_4824 0.55 -0.1 5,722,212 + Psyr_4824 0.55 +0.6 5,722,212 + Psyr_4824 0.55 +0.0 5,722,213 - Psyr_4824 0.55 +0.1 5,722,213 - Psyr_4824 0.55 -1.9 5,722,213 - Psyr_4824 0.55 +1.2 5,722,337 + Psyr_4824 0.68 +2.2 5,722,337 + Psyr_4824 0.68 +1.0 5,722,337 + Psyr_4824 0.68 +2.0 5,722,338 - Psyr_4824 0.68 +0.7 5,722,338 - Psyr_4824 0.68 -0.6 5,722,338 - Psyr_4824 0.68 -1.4
Or see this region's nucleotide sequence