Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4303

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4302 and Psyr_4303 are separated by 197 nucleotidesPsyr_4303 and Psyr_4304 are separated by 33 nucleotides Psyr_4302: Psyr_4302 - conserved hypothetical protein, at 5,128,171 to 5,128,875 _4302 Psyr_4303: Psyr_4303 - Protein of unknown function UPF0259, at 5,129,073 to 5,129,735 _4303 Psyr_4304: Psyr_4304 - Endonuclease/exonuclease/phosphatase, at 5,129,769 to 5,130,911 _4304 Position (kb) 5129 5130Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5128.235 kb on + strandat 5128.235 kb on + strandat 5128.236 kb on - strandat 5128.236 kb on - strandat 5128.362 kb on + strand, within Psyr_4302at 5128.363 kb on - strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.578 kb on + strand, within Psyr_4302at 5128.579 kb on - strand, within Psyr_4302at 5128.579 kb on - strand, within Psyr_4302at 5128.678 kb on + strand, within Psyr_4302at 5128.679 kb on - strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.736 kb on + strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5128.737 kb on - strand, within Psyr_4302at 5129.035 kb on + strandat 5129.054 kb on + strandat 5129.054 kb on + strandat 5129.066 kb on + strandat 5129.066 kb on + strandat 5129.066 kb on + strandat 5129.066 kb on + strandat 5129.066 kb on + strandat 5129.066 kb on + strandat 5129.067 kb on - strandat 5129.067 kb on - strandat 5129.067 kb on - strandat 5129.067 kb on - strandat 5129.067 kb on - strandat 5129.067 kb on - strandat 5129.067 kb on - strandat 5129.106 kb on + strandat 5129.107 kb on - strandat 5129.107 kb on - strandat 5129.121 kb on - strandat 5129.125 kb on + strandat 5129.126 kb on - strandat 5129.126 kb on - strandat 5129.126 kb on - strandat 5129.126 kb on - strandat 5129.126 kb on - strandat 5129.255 kb on + strand, within Psyr_4303at 5129.255 kb on + strand, within Psyr_4303at 5129.255 kb on + strand, within Psyr_4303at 5129.255 kb on + strand, within Psyr_4303at 5129.255 kb on + strand, within Psyr_4303at 5129.255 kb on + strand, within Psyr_4303at 5129.255 kb on + strand, within Psyr_4303at 5129.256 kb on - strand, within Psyr_4303at 5129.256 kb on - strand, within Psyr_4303at 5129.256 kb on - strand, within Psyr_4303at 5129.256 kb on - strand, within Psyr_4303at 5129.259 kb on + strand, within Psyr_4303at 5129.260 kb on - strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.311 kb on + strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strand, within Psyr_4303at 5129.312 kb on - strandat 5129.326 kb on + strand, within Psyr_4303at 5129.326 kb on + strand, within Psyr_4303at 5129.326 kb on + strand, within Psyr_4303at 5129.326 kb on + strand, within Psyr_4303at 5129.554 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.565 kb on + strand, within Psyr_4303at 5129.566 kb on - strand, within Psyr_4303at 5129.566 kb on - strand, within Psyr_4303at 5129.566 kb on - strand, within Psyr_4303at 5129.602 kb on - strand, within Psyr_4303at 5129.602 kb on - strand, within Psyr_4303at 5129.830 kb on + strandat 5129.831 kb on - strandat 5129.836 kb on + strandat 5129.836 kb on + strandat 5129.836 kb on + strandat 5129.836 kb on + strandat 5129.836 kb on + strandat 5129.837 kb on - strandat 5129.837 kb on - strandat 5129.837 kb on - strandat 5129.837 kb on - strandat 5129.923 kb on + strand, within Psyr_4304at 5129.923 kb on + strand, within Psyr_4304at 5129.923 kb on + strand, within Psyr_4304at 5129.924 kb on - strand, within Psyr_4304at 5129.924 kb on - strand, within Psyr_4304at 5129.924 kb on - strand, within Psyr_4304at 5130.027 kb on + strand, within Psyr_4304at 5130.027 kb on + strand, within Psyr_4304at 5130.190 kb on - strand, within Psyr_4304at 5130.190 kb on - strand, within Psyr_4304at 5130.234 kb on + strand, within Psyr_4304at 5130.290 kb on + strand, within Psyr_4304at 5130.290 kb on + strand, within Psyr_4304at 5130.290 kb on + strand, within Psyr_4304at 5130.290 kb on + strand, within Psyr_4304at 5130.290 kb on + strand, within Psyr_4304at 5130.291 kb on - strand, within Psyr_4304at 5130.291 kb on - strand, within Psyr_4304at 5130.429 kb on + strand, within Psyr_4304at 5130.429 kb on + strand, within Psyr_4304at 5130.429 kb on + strand, within Psyr_4304at 5130.430 kb on - strand, within Psyr_4304at 5130.430 kb on - strand, within Psyr_4304at 5130.430 kb on - strand, within Psyr_4304at 5130.673 kb on + strand, within Psyr_4304at 5130.673 kb on + strand, within Psyr_4304at 5130.674 kb on - strand, within Psyr_4304at 5130.674 kb on - strand, within Psyr_4304at 5130.684 kb on + strand, within Psyr_4304at 5130.685 kb on - strand, within Psyr_4304

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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5,128,235 + +1.3
5,128,235 + -0.9
5,128,236 - +0.6
5,128,236 - -0.5
5,128,362 + Psyr_4302 0.27 +0.1
5,128,363 - Psyr_4302 0.27 -0.9
5,128,578 + Psyr_4302 0.58 -0.4
5,128,578 + Psyr_4302 0.58 -0.9
5,128,578 + Psyr_4302 0.58 -0.1
5,128,578 + Psyr_4302 0.58 -0.1
5,128,579 - Psyr_4302 0.58 -1.2
5,128,579 - Psyr_4302 0.58 -0.8
5,128,678 + Psyr_4302 0.72 +0.9
5,128,679 - Psyr_4302 0.72 -0.1
5,128,736 + Psyr_4302 0.80 +1.1
5,128,736 + Psyr_4302 0.80 -1.1
5,128,736 + Psyr_4302 0.80 -3.0
5,128,736 + Psyr_4302 0.80 +0.6
5,128,736 + Psyr_4302 0.80 -1.5
5,128,736 + Psyr_4302 0.80 +0.1
5,128,736 + Psyr_4302 0.80 -1.3
5,128,736 + Psyr_4302 0.80 +1.2
5,128,737 - Psyr_4302 0.80 +0.9
5,128,737 - Psyr_4302 0.80 -0.9
5,128,737 - Psyr_4302 0.80 +1.1
5,128,737 - Psyr_4302 0.80 -2.0
5,128,737 - Psyr_4302 0.80 -1.1
5,128,737 - Psyr_4302 0.80 +0.2
5,128,737 - Psyr_4302 0.80 +0.8
5,128,737 - Psyr_4302 0.80 -0.0
5,128,737 - Psyr_4302 0.80 +0.1
5,128,737 - Psyr_4302 0.80 +1.4
5,128,737 - Psyr_4302 0.80 +1.3
5,129,035 + -0.9
5,129,054 + +2.4
5,129,054 + -1.2
5,129,066 + -1.1
5,129,066 + +0.3
5,129,066 + +1.6
5,129,066 + -0.4
5,129,066 + -0.2
5,129,066 + +2.1
5,129,067 - +0.9
5,129,067 - -0.3
5,129,067 - -0.6
5,129,067 - -1.6
5,129,067 - +0.2
5,129,067 - +0.1
5,129,067 - +0.1
5,129,106 + +0.1
5,129,107 - -0.7
5,129,107 - +0.9
5,129,121 - -2.0
5,129,125 + +1.9
5,129,126 - -1.9
5,129,126 - -0.3
5,129,126 - +0.4
5,129,126 - +1.5
5,129,126 - +0.6
5,129,255 + Psyr_4303 0.27 +0.1
5,129,255 + Psyr_4303 0.27 -1.4
5,129,255 + Psyr_4303 0.27 -0.2
5,129,255 + Psyr_4303 0.27 -1.2
5,129,255 + Psyr_4303 0.27 -0.4
5,129,255 + Psyr_4303 0.27 -0.9
5,129,255 + Psyr_4303 0.27 -0.5
5,129,256 - Psyr_4303 0.28 +1.1
5,129,256 - Psyr_4303 0.28 -0.6
5,129,256 - Psyr_4303 0.28 -0.8
5,129,256 - Psyr_4303 0.28 -1.5
5,129,259 + Psyr_4303 0.28 -1.2
5,129,260 - Psyr_4303 0.28 +1.6
5,129,311 + Psyr_4303 0.36 -0.9
5,129,311 + Psyr_4303 0.36 -0.3
5,129,311 + Psyr_4303 0.36 +0.7
5,129,311 + Psyr_4303 0.36 +0.8
5,129,311 + Psyr_4303 0.36 +0.3
5,129,311 + Psyr_4303 0.36 -0.6
5,129,311 + Psyr_4303 0.36 +0.4
5,129,311 + Psyr_4303 0.36 -0.5
5,129,311 + Psyr_4303 0.36 -0.5
5,129,311 + Psyr_4303 0.36 +0.3
5,129,312 - Psyr_4303 0.36 +3.4
5,129,312 - Psyr_4303 0.36 -0.1
5,129,312 - Psyr_4303 0.36 -0.5
5,129,312 - Psyr_4303 0.36 -0.5
5,129,312 - Psyr_4303 0.36 -1.1
5,129,312 - Psyr_4303 0.36 +0.1
5,129,312 - Psyr_4303 0.36 -0.3
5,129,312 - Psyr_4303 0.36 -0.1
5,129,312 - Psyr_4303 0.36 +1.5
5,129,312 - Psyr_4303 0.36 -0.6
5,129,312 - +0.1
5,129,326 + Psyr_4303 0.38 -0.2
5,129,326 + Psyr_4303 0.38 -0.1
5,129,326 + Psyr_4303 0.38 -0.7
5,129,326 + Psyr_4303 0.38 +1.6
5,129,554 + Psyr_4303 0.73 -0.1
5,129,565 + Psyr_4303 0.74 -2.6
5,129,565 + Psyr_4303 0.74 -0.5
5,129,565 + Psyr_4303 0.74 -0.3
5,129,565 + Psyr_4303 0.74 -2.5
5,129,565 + Psyr_4303 0.74 -0.3
5,129,565 + Psyr_4303 0.74 +1.1
5,129,565 + Psyr_4303 0.74 +0.3
5,129,565 + Psyr_4303 0.74 -0.6
5,129,566 - Psyr_4303 0.74 -1.1
5,129,566 - Psyr_4303 0.74 +1.1
5,129,566 - Psyr_4303 0.74 -0.6
5,129,602 - Psyr_4303 0.80 -1.2
5,129,602 - Psyr_4303 0.80 -0.5
5,129,830 + -0.3
5,129,831 - +1.1
5,129,836 + +0.2
5,129,836 + -1.3
5,129,836 + -1.0
5,129,836 + +0.7
5,129,836 + -0.3
5,129,837 - +0.6
5,129,837 - +1.2
5,129,837 - -0.9
5,129,837 - -0.7
5,129,923 + Psyr_4304 0.13 +0.5
5,129,923 + Psyr_4304 0.13 +0.6
5,129,923 + Psyr_4304 0.13 -0.1
5,129,924 - Psyr_4304 0.14 -1.2
5,129,924 - Psyr_4304 0.14 +1.1
5,129,924 - Psyr_4304 0.14 -0.1
5,130,027 + Psyr_4304 0.23 -0.3
5,130,027 + Psyr_4304 0.23 -1.3
5,130,190 - Psyr_4304 0.37 -0.3
5,130,190 - Psyr_4304 0.37 -0.5
5,130,234 + Psyr_4304 0.41 +0.1
5,130,290 + Psyr_4304 0.46 -0.5
5,130,290 + Psyr_4304 0.46 +0.1
5,130,290 + Psyr_4304 0.46 -0.6
5,130,290 + Psyr_4304 0.46 -0.2
5,130,290 + Psyr_4304 0.46 +2.1
5,130,291 - Psyr_4304 0.46 -1.0
5,130,291 - Psyr_4304 0.46 -0.1
5,130,429 + Psyr_4304 0.58 -0.0
5,130,429 + Psyr_4304 0.58 +0.5
5,130,429 + Psyr_4304 0.58 +0.1
5,130,430 - Psyr_4304 0.58 +1.5
5,130,430 - Psyr_4304 0.58 +1.2
5,130,430 - Psyr_4304 0.58 +0.5
5,130,673 + Psyr_4304 0.79 +0.1
5,130,673 + Psyr_4304 0.79 -0.9
5,130,674 - Psyr_4304 0.79 -1.6
5,130,674 - Psyr_4304 0.79 -0.6
5,130,684 + Psyr_4304 0.80 +0.1
5,130,685 - Psyr_4304 0.80 +0.2

Or see this region's nucleotide sequence