Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4273 and Psyr_4274 are separated by 284 nucleotides Psyr_4274 and Psyr_4275 are separated by 6 nucleotides Psyr_4275 and Psyr_4276 are separated by 196 nucleotides Psyr_4276 and Psyr_4277 are separated by 190 nucleotides
Psyr_4273: Psyr_4273 - Carbon starvation protein CstA, at 5,096,778 to 5,098,853
_4273
Psyr_4274: Psyr_4274 - conserved hypothetical protein, at 5,099,138 to 5,099,506
_4274
Psyr_4275: Psyr_4275 - DNA replication and repair protein RadA, at 5,099,513 to 5,100,880
_4275
Psyr_4276: Psyr_4276 - Large-conductance mechanosensitive channel, at 5,101,077 to 5,101,523
_4276
Psyr_4277: Psyr_4277 - Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region, at 5,101,714 to 5,102,490
_4277
Position (kb) 5099
5100
5101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5098.606 kb on + strand, within Psyr_4273 at 5098.606 kb on + strand, within Psyr_4273 at 5098.606 kb on + strand, within Psyr_4273 at 5098.606 kb on + strand, within Psyr_4273 at 5098.606 kb on + strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.607 kb on - strand, within Psyr_4273 at 5098.690 kb on + strand at 5098.690 kb on + strand at 5098.690 kb on + strand at 5098.690 kb on + strand at 5098.690 kb on + strand at 5098.690 kb on + strand at 5098.690 kb on + strand at 5098.691 kb on - strand at 5098.691 kb on - strand at 5098.691 kb on - strand at 5098.691 kb on - strand at 5098.691 kb on - strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.711 kb on + strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.712 kb on - strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.715 kb on + strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.716 kb on - strand at 5098.719 kb on + strand at 5098.720 kb on - strand at 5098.839 kb on - strand at 5098.839 kb on - strand at 5098.841 kb on + strand at 5098.841 kb on + strand at 5098.844 kb on + strand at 5098.844 kb on + strand at 5098.877 kb on + strand at 5098.877 kb on + strand at 5098.877 kb on + strand at 5098.877 kb on + strand at 5098.877 kb on + strand at 5098.878 kb on - strand at 5098.938 kb on + strand at 5098.938 kb on + strand at 5098.938 kb on + strand at 5098.939 kb on - strand at 5098.976 kb on + strand at 5099.042 kb on + strand at 5099.042 kb on + strand at 5099.058 kb on + strand at 5099.059 kb on - strand at 5099.088 kb on + strand at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.339 kb on + strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.340 kb on - strand, within Psyr_4274 at 5099.514 kb on + strand at 5099.514 kb on + strand at 5099.907 kb on - strand, within Psyr_4275 at 5100.009 kb on - strand, within Psyr_4275 at 5100.168 kb on + strand, within Psyr_4275 at 5100.168 kb on + strand, within Psyr_4275 at 5100.168 kb on + strand, within Psyr_4275 at 5100.168 kb on + strand, within Psyr_4275 at 5100.169 kb on - strand, within Psyr_4275 at 5100.169 kb on - strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.513 kb on + strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.514 kb on - strand, within Psyr_4275 at 5100.858 kb on + strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5100.859 kb on - strand at 5100.977 kb on - strand at 5100.977 kb on - strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.022 kb on + strand at 5101.023 kb on + strand at 5101.023 kb on - strand at 5101.023 kb on - strand at 5101.033 kb on + strand at 5101.054 kb on + strand at 5101.055 kb on - strand at 5101.061 kb on + strand at 5101.061 kb on + strand at 5101.062 kb on - strand at 5101.071 kb on + strand at 5101.071 kb on + strand at 5101.071 kb on + strand at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.123 kb on + strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.124 kb on - strand, within Psyr_4276 at 5101.142 kb on + strand, within Psyr_4276 at 5101.143 kb on - strand, within Psyr_4276 at 5101.145 kb on + strand, within Psyr_4276 at 5101.145 kb on + strand, within Psyr_4276 at 5101.146 kb on - strand, within Psyr_4276 at 5101.351 kb on + strand, within Psyr_4276 at 5101.351 kb on + strand, within Psyr_4276 at 5101.352 kb on - strand, within Psyr_4276 at 5101.515 kb on - strand at 5101.660 kb on + strand at 5101.660 kb on + strand at 5101.668 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.721 kb on + strand at 5101.722 kb on - strand at 5101.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 5,098,606 + Psyr_4273 0.88 -2.1 5,098,606 + Psyr_4273 0.88 +1.1 5,098,606 + Psyr_4273 0.88 -0.5 5,098,606 + Psyr_4273 0.88 -1.2 5,098,606 + Psyr_4273 0.88 -1.1 5,098,607 - Psyr_4273 0.88 +1.3 5,098,607 - Psyr_4273 0.88 +2.6 5,098,607 - Psyr_4273 0.88 -0.4 5,098,607 - Psyr_4273 0.88 +0.4 5,098,607 - Psyr_4273 0.88 -0.3 5,098,607 - Psyr_4273 0.88 -0.3 5,098,607 - Psyr_4273 0.88 -0.8 5,098,607 - Psyr_4273 0.88 +0.5 5,098,690 + -0.1 5,098,690 + +0.5 5,098,690 + -1.3 5,098,690 + -0.1 5,098,690 + -0.7 5,098,690 + +3.1 5,098,690 + +0.1 5,098,691 - -0.2 5,098,691 - +4.4 5,098,691 - +1.1 5,098,691 - -1.4 5,098,691 - +1.2 5,098,711 + +0.7 5,098,711 + +0.6 5,098,711 + +0.6 5,098,711 + +0.8 5,098,711 + +0.1 5,098,711 + +0.6 5,098,711 + +2.1 5,098,711 + -0.4 5,098,712 - +0.1 5,098,712 - +0.6 5,098,712 - -0.4 5,098,712 - +0.3 5,098,712 - -1.2 5,098,712 - -2.2 5,098,712 - -1.1 5,098,712 - +1.1 5,098,712 - -0.5 5,098,712 - -1.8 5,098,712 - +0.2 5,098,715 + +0.3 5,098,715 + +0.4 5,098,715 + -0.9 5,098,715 + -1.3 5,098,715 + -0.1 5,098,715 + -0.8 5,098,715 + +3.1 5,098,715 + -0.1 5,098,715 + +0.5 5,098,715 + -0.8 5,098,715 + +0.2 5,098,716 - -1.8 5,098,716 - -1.3 5,098,716 - +0.6 5,098,716 - -1.8 5,098,716 - +0.3 5,098,716 - -0.3 5,098,716 - -0.6 5,098,716 - -0.5 5,098,716 - +1.1 5,098,716 - -0.7 5,098,716 - +1.5 5,098,716 - -1.1 5,098,716 - +0.1 5,098,716 - +0.4 5,098,716 - +0.1 5,098,716 - -0.5 5,098,719 + -0.4 5,098,720 - -1.0 5,098,839 - +1.1 5,098,839 - -0.7 5,098,841 + -1.1 5,098,841 + +0.2 5,098,844 + +0.5 5,098,844 + +0.9 5,098,877 + +2.3 5,098,877 + +0.2 5,098,877 + +0.5 5,098,877 + -0.0 5,098,877 + +0.5 5,098,878 - +0.2 5,098,938 + +0.7 5,098,938 + +2.2 5,098,938 + +0.8 5,098,939 - -0.1 5,098,976 + +0.2 5,099,042 + +1.1 5,099,042 + +1.7 5,099,058 + +0.3 5,099,059 - -1.4 5,099,088 + +1.2 5,099,339 + Psyr_4274 0.54 -0.0 5,099,339 + Psyr_4274 0.54 +1.5 5,099,339 + Psyr_4274 0.54 -0.1 5,099,339 + Psyr_4274 0.54 +1.3 5,099,339 + Psyr_4274 0.54 -0.4 5,099,339 + Psyr_4274 0.54 -0.1 5,099,339 + Psyr_4274 0.54 -0.4 5,099,339 + Psyr_4274 0.54 +0.1 5,099,339 + Psyr_4274 0.54 -0.9 5,099,339 + Psyr_4274 0.54 -0.6 5,099,339 + Psyr_4274 0.54 -0.9 5,099,339 + Psyr_4274 0.54 +0.2 5,099,339 + Psyr_4274 0.54 +0.1 5,099,339 + Psyr_4274 0.54 +0.3 5,099,339 + Psyr_4274 0.54 -0.2 5,099,339 + Psyr_4274 0.54 -1.6 5,099,340 - Psyr_4274 0.55 -1.1 5,099,340 - Psyr_4274 0.55 -0.7 5,099,340 - Psyr_4274 0.55 -2.0 5,099,340 - Psyr_4274 0.55 -3.2 5,099,340 - Psyr_4274 0.55 -1.3 5,099,340 - Psyr_4274 0.55 +0.6 5,099,340 - Psyr_4274 0.55 +0.4 5,099,340 - Psyr_4274 0.55 -0.7 5,099,340 - Psyr_4274 0.55 -1.1 5,099,340 - Psyr_4274 0.55 -0.9 5,099,340 - Psyr_4274 0.55 -0.3 5,099,340 - Psyr_4274 0.55 +0.2 5,099,514 + +1.3 5,099,514 + +1.0 5,099,907 - Psyr_4275 0.29 -0.5 5,100,009 - Psyr_4275 0.36 +0.5 5,100,168 + Psyr_4275 0.48 -0.5 5,100,168 + Psyr_4275 0.48 -0.4 5,100,168 + Psyr_4275 0.48 -1.4 5,100,168 + Psyr_4275 0.48 +0.6 5,100,169 - Psyr_4275 0.48 -0.5 5,100,169 - Psyr_4275 0.48 -2.5 5,100,513 + Psyr_4275 0.73 +0.5 5,100,513 + Psyr_4275 0.73 +0.6 5,100,513 + Psyr_4275 0.73 +0.8 5,100,513 + Psyr_4275 0.73 +0.4 5,100,513 + Psyr_4275 0.73 -0.9 5,100,513 + Psyr_4275 0.73 -0.8 5,100,513 + Psyr_4275 0.73 -0.1 5,100,513 + Psyr_4275 0.73 +1.1 5,100,514 - Psyr_4275 0.73 -0.3 5,100,514 - Psyr_4275 0.73 -0.5 5,100,514 - Psyr_4275 0.73 -1.6 5,100,514 - Psyr_4275 0.73 -0.9 5,100,514 - Psyr_4275 0.73 -0.8 5,100,514 - Psyr_4275 0.73 +3.1 5,100,514 - Psyr_4275 0.73 -0.6 5,100,514 - Psyr_4275 0.73 +0.6 5,100,514 - Psyr_4275 0.73 -0.3 5,100,514 - Psyr_4275 0.73 +0.1 5,100,514 - Psyr_4275 0.73 -2.2 5,100,858 + -0.5 5,100,859 - -0.3 5,100,859 - +0.2 5,100,859 - -0.4 5,100,977 - -0.4 5,100,977 - +1.1 5,101,022 + +1.1 5,101,022 + +0.9 5,101,022 + +2.1 5,101,022 + -2.3 5,101,023 + -0.5 5,101,023 - -0.4 5,101,023 - +0.1 5,101,033 + +1.4 5,101,054 + -0.1 5,101,055 - -1.7 5,101,061 + +0.2 5,101,061 + +1.6 5,101,062 - -1.8 5,101,071 + -1.9 5,101,071 + +0.2 5,101,071 + +0.2 5,101,123 + Psyr_4276 0.10 +0.6 5,101,123 + Psyr_4276 0.10 -0.2 5,101,123 + Psyr_4276 0.10 +0.5 5,101,123 + Psyr_4276 0.10 +0.5 5,101,123 + Psyr_4276 0.10 -0.3 5,101,123 + Psyr_4276 0.10 -2.2 5,101,123 + Psyr_4276 0.10 +2.9 5,101,123 + Psyr_4276 0.10 -0.2 5,101,123 + Psyr_4276 0.10 -1.3 5,101,123 + Psyr_4276 0.10 +0.8 5,101,123 + Psyr_4276 0.10 +0.6 5,101,123 + Psyr_4276 0.10 -0.9 5,101,124 - Psyr_4276 0.11 +1.5 5,101,124 - Psyr_4276 0.11 -0.2 5,101,124 - Psyr_4276 0.11 +1.1 5,101,124 - Psyr_4276 0.11 +0.1 5,101,124 - Psyr_4276 0.11 -1.2 5,101,124 - Psyr_4276 0.11 -0.4 5,101,124 - Psyr_4276 0.11 +1.1 5,101,124 - Psyr_4276 0.11 +0.9 5,101,124 - Psyr_4276 0.11 -1.9 5,101,124 - Psyr_4276 0.11 +3.9 5,101,124 - Psyr_4276 0.11 -0.2 5,101,124 - Psyr_4276 0.11 -2.4 5,101,142 + Psyr_4276 0.15 +0.8 5,101,143 - Psyr_4276 0.15 +0.4 5,101,145 + Psyr_4276 0.15 -0.7 5,101,145 + Psyr_4276 0.15 +0.7 5,101,146 - Psyr_4276 0.15 +0.2 5,101,351 + Psyr_4276 0.61 -1.6 5,101,351 + Psyr_4276 0.61 +0.1 5,101,352 - Psyr_4276 0.62 -0.0 5,101,515 - -0.3 5,101,660 + -1.3 5,101,660 + -0.1 5,101,668 + +0.9 5,101,721 + -1.8 5,101,721 + +1.0 5,101,721 + -0.2 5,101,721 + +0.1 5,101,721 + -1.3 5,101,721 + +3.6 5,101,721 + -0.7 5,101,721 + +0.9 5,101,721 + +1.1 5,101,721 + +0.2 5,101,721 + -1.4 5,101,722 - +0.1 5,101,722 - +1.0
Or see this region's nucleotide sequence