Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4113 and Psyr_4114 overlap by 1 nucleotides Psyr_4114 and Psyr_4115 are separated by 161 nucleotides Psyr_4115 and Psyr_4116 overlap by 4 nucleotides
Psyr_4113: Psyr_4113 - LppC putative lipoprotein, at 4,903,778 to 4,905,592
_4113
Psyr_4114: Psyr_4114 - Protein of unknown function UPF0102, at 4,905,592 to 4,905,963
_4114
Psyr_4115: Psyr_4115 - phosphoheptose isomerase, at 4,906,125 to 4,906,718
_4115
Psyr_4116: Psyr_4116 - Transport-associated protein, at 4,906,715 to 4,907,293
_4116
Position (kb) 4905
4906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4904.690 kb on + strand, within Psyr_4113 at 4904.691 kb on - strand, within Psyr_4113 at 4904.788 kb on + strand, within Psyr_4113 at 4904.789 kb on - strand, within Psyr_4113 at 4904.805 kb on - strand, within Psyr_4113 at 4904.805 kb on - strand, within Psyr_4113 at 4904.805 kb on - strand, within Psyr_4113 at 4904.840 kb on + strand, within Psyr_4113 at 4904.840 kb on + strand, within Psyr_4113 at 4905.030 kb on + strand, within Psyr_4113 at 4905.219 kb on - strand, within Psyr_4113 at 4905.239 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.284 kb on + strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.285 kb on - strand, within Psyr_4113 at 4905.404 kb on + strand, within Psyr_4113 at 4905.405 kb on - strand, within Psyr_4113 at 4905.405 kb on - strand, within Psyr_4113 at 4905.425 kb on + strand at 4905.426 kb on - strand at 4905.692 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.716 kb on + strand, within Psyr_4114 at 4905.717 kb on - strand, within Psyr_4114 at 4905.717 kb on - strand, within Psyr_4114 at 4905.735 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.740 kb on + strand, within Psyr_4114 at 4905.743 kb on + strand, within Psyr_4114 at 4905.743 kb on + strand, within Psyr_4114 at 4906.000 kb on + strand at 4906.026 kb on + strand at 4906.026 kb on + strand at 4906.108 kb on + strand at 4906.108 kb on + strand at 4906.108 kb on + strand at 4906.108 kb on + strand at 4906.109 kb on - strand at 4906.109 kb on - strand at 4906.112 kb on + strand at 4906.112 kb on + strand at 4906.112 kb on + strand at 4906.112 kb on + strand at 4906.413 kb on + strand, within Psyr_4115 at 4906.414 kb on - strand, within Psyr_4115 at 4906.503 kb on - strand, within Psyr_4115 at 4906.505 kb on + strand, within Psyr_4115 at 4906.506 kb on - strand, within Psyr_4115 at 4906.642 kb on + strand, within Psyr_4115 at 4906.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 4,904,690 + Psyr_4113 0.50 +2.0 4,904,691 - Psyr_4113 0.50 -0.7 4,904,788 + Psyr_4113 0.56 +0.9 4,904,789 - Psyr_4113 0.56 -0.6 4,904,805 - Psyr_4113 0.57 -0.3 4,904,805 - Psyr_4113 0.57 -0.1 4,904,805 - Psyr_4113 0.57 +0.8 4,904,840 + Psyr_4113 0.59 -0.4 4,904,840 + Psyr_4113 0.59 +0.9 4,905,030 + Psyr_4113 0.69 +2.0 4,905,219 - Psyr_4113 0.79 -0.3 4,905,239 + Psyr_4113 0.80 +1.5 4,905,284 + Psyr_4113 0.83 +1.8 4,905,284 + Psyr_4113 0.83 -0.4 4,905,284 + Psyr_4113 0.83 +0.4 4,905,284 + Psyr_4113 0.83 -1.8 4,905,284 + Psyr_4113 0.83 +0.6 4,905,284 + Psyr_4113 0.83 +2.3 4,905,284 + Psyr_4113 0.83 -0.1 4,905,284 + Psyr_4113 0.83 +1.1 4,905,284 + Psyr_4113 0.83 -0.1 4,905,284 + Psyr_4113 0.83 +0.5 4,905,284 + Psyr_4113 0.83 -0.4 4,905,284 + Psyr_4113 0.83 -0.1 4,905,284 + Psyr_4113 0.83 +1.3 4,905,284 + Psyr_4113 0.83 +0.8 4,905,285 - Psyr_4113 0.83 +0.6 4,905,285 - Psyr_4113 0.83 +0.4 4,905,285 - Psyr_4113 0.83 -1.6 4,905,285 - Psyr_4113 0.83 +1.4 4,905,285 - Psyr_4113 0.83 +0.3 4,905,285 - Psyr_4113 0.83 +1.4 4,905,285 - Psyr_4113 0.83 -2.8 4,905,285 - Psyr_4113 0.83 +0.3 4,905,285 - Psyr_4113 0.83 -1.1 4,905,285 - Psyr_4113 0.83 -1.0 4,905,285 - Psyr_4113 0.83 -1.0 4,905,285 - Psyr_4113 0.83 +1.5 4,905,404 + Psyr_4113 0.90 +0.1 4,905,405 - Psyr_4113 0.90 -0.6 4,905,405 - Psyr_4113 0.90 -0.2 4,905,425 + +0.3 4,905,426 - -0.3 4,905,692 + Psyr_4114 0.27 +1.0 4,905,716 + Psyr_4114 0.33 +1.7 4,905,716 + Psyr_4114 0.33 +0.7 4,905,716 + Psyr_4114 0.33 +1.4 4,905,716 + Psyr_4114 0.33 +1.9 4,905,716 + Psyr_4114 0.33 +1.1 4,905,716 + Psyr_4114 0.33 +0.3 4,905,716 + Psyr_4114 0.33 -3.0 4,905,716 + Psyr_4114 0.33 -0.3 4,905,717 - Psyr_4114 0.34 +0.4 4,905,717 - Psyr_4114 0.34 +1.7 4,905,735 + Psyr_4114 0.38 -0.6 4,905,740 + Psyr_4114 0.40 +0.7 4,905,740 + Psyr_4114 0.40 +1.2 4,905,740 + Psyr_4114 0.40 +0.8 4,905,740 + Psyr_4114 0.40 +0.3 4,905,740 + Psyr_4114 0.40 +0.0 4,905,743 + Psyr_4114 0.41 -1.1 4,905,743 + Psyr_4114 0.41 +1.2 4,906,000 + -0.6 4,906,026 + +0.4 4,906,026 + -0.7 4,906,108 + +1.1 4,906,108 + -1.2 4,906,108 + +0.9 4,906,108 + -0.6 4,906,109 - -2.2 4,906,109 - -0.2 4,906,112 + +0.2 4,906,112 + +1.0 4,906,112 + +0.1 4,906,112 + +1.3 4,906,413 + Psyr_4115 0.48 -0.9 4,906,414 - Psyr_4115 0.49 -2.3 4,906,503 - Psyr_4115 0.64 -2.6 4,906,505 + Psyr_4115 0.64 -0.0 4,906,506 - Psyr_4115 0.64 -0.3 4,906,642 + Psyr_4115 0.87 -2.3 4,906,724 - -0.6
Or see this region's nucleotide sequence