Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3663

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3661 and Psyr_3662 overlap by 8 nucleotidesPsyr_3662 and Psyr_3663 are separated by 20 nucleotidesPsyr_3663 and Psyr_3664 are separated by 100 nucleotidesPsyr_3664 and Psyr_3665 are separated by 226 nucleotides Psyr_3661: Psyr_3661 - Fumarate hydratase, class II, at 4,347,509 to 4,348,903 _3661 Psyr_3662: Psyr_3662 - NAD(P)H dehydrogenase (quinone), at 4,348,896 to 4,349,510 _3662 Psyr_3663: Psyr_3663 - Protein of unknown function DUF6, at 4,349,531 to 4,350,490 _3663 Psyr_3664: Psyr_3664 - DTW, at 4,350,591 to 4,351,190 _3664 Psyr_3665: Psyr_3665 - conserved hypothetical protein, at 4,351,417 to 4,351,719 _3665 Position (kb) 4349 4350 4351Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4348.583 kb on + strand, within Psyr_3661at 4348.583 kb on + strand, within Psyr_3661at 4348.583 kb on + strand, within Psyr_3661at 4348.584 kb on - strand, within Psyr_3661at 4348.584 kb on - strand, within Psyr_3661at 4348.788 kb on - strandat 4348.895 kb on - strandat 4348.960 kb on - strand, within Psyr_3662at 4349.341 kb on - strand, within Psyr_3662at 4349.355 kb on + strand, within Psyr_3662at 4349.384 kb on - strand, within Psyr_3662at 4349.393 kb on - strand, within Psyr_3662at 4349.480 kb on + strandat 4349.481 kb on - strandat 4349.667 kb on + strand, within Psyr_3663at 4349.667 kb on + strand, within Psyr_3663at 4349.667 kb on + strand, within Psyr_3663at 4349.668 kb on - strand, within Psyr_3663at 4349.668 kb on - strand, within Psyr_3663at 4349.788 kb on - strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.901 kb on + strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.902 kb on - strand, within Psyr_3663at 4349.915 kb on + strand, within Psyr_3663at 4349.933 kb on + strand, within Psyr_3663at 4349.934 kb on - strand, within Psyr_3663at 4349.934 kb on - strand, within Psyr_3663at 4349.965 kb on - strand, within Psyr_3663at 4350.015 kb on + strand, within Psyr_3663at 4350.015 kb on + strand, within Psyr_3663at 4350.016 kb on - strand, within Psyr_3663at 4350.016 kb on - strand, within Psyr_3663at 4350.084 kb on - strand, within Psyr_3663at 4350.219 kb on + strand, within Psyr_3663at 4350.219 kb on + strand, within Psyr_3663at 4350.219 kb on + strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.220 kb on - strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.228 kb on + strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.229 kb on - strand, within Psyr_3663at 4350.379 kb on + strand, within Psyr_3663at 4350.462 kb on + strandat 4350.463 kb on - strandat 4350.509 kb on + strandat 4350.509 kb on + strandat 4350.510 kb on - strandat 4350.510 kb on - strandat 4350.510 kb on - strandat 4350.510 kb on - strandat 4350.529 kb on - strandat 4350.555 kb on - strandat 4350.555 kb on - strandat 4350.555 kb on - strandat 4350.620 kb on - strandat 4350.913 kb on + strand, within Psyr_3664at 4350.913 kb on + strand, within Psyr_3664at 4350.914 kb on - strand, within Psyr_3664at 4350.914 kb on - strand, within Psyr_3664at 4350.914 kb on - strand, within Psyr_3664at 4350.914 kb on - strand, within Psyr_3664at 4350.914 kb on - strand, within Psyr_3664at 4351.286 kb on + strandat 4351.344 kb on - strandat 4351.376 kb on + strandat 4351.376 kb on + strandat 4351.376 kb on + strandat 4351.376 kb on + strandat 4351.376 kb on + strandat 4351.376 kb on + strandat 4351.377 kb on - strandat 4351.377 kb on - strandat 4351.387 kb on + strandat 4351.387 kb on + strandat 4351.387 kb on + strandat 4351.387 kb on + strandat 4351.387 kb on + strandat 4351.388 kb on - strandat 4351.388 kb on - strandat 4351.388 kb on - strandat 4351.388 kb on - strandat 4351.388 kb on - strandat 4351.388 kb on - strandat 4351.458 kb on - strand, within Psyr_3665at 4351.469 kb on + strand, within Psyr_3665at 4351.469 kb on + strand, within Psyr_3665at 4351.469 kb on + strand, within Psyr_3665at 4351.469 kb on + strand, within Psyr_3665at 4351.469 kb on + strand, within Psyr_3665at 4351.470 kb on - strand, within Psyr_3665

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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4,348,583 + Psyr_3661 0.77 +0.9
4,348,583 + Psyr_3661 0.77 +1.1
4,348,583 + Psyr_3661 0.77 +0.4
4,348,584 - Psyr_3661 0.77 +0.2
4,348,584 - Psyr_3661 0.77 -2.0
4,348,788 - +0.3
4,348,895 - +0.4
4,348,960 - Psyr_3662 0.10 -0.1
4,349,341 - Psyr_3662 0.72 +0.9
4,349,355 + Psyr_3662 0.75 +0.3
4,349,384 - Psyr_3662 0.79 +0.5
4,349,393 - Psyr_3662 0.81 +1.7
4,349,480 + -0.6
4,349,481 - -1.3
4,349,667 + Psyr_3663 0.14 +0.8
4,349,667 + Psyr_3663 0.14 -1.4
4,349,667 + Psyr_3663 0.14 -0.3
4,349,668 - Psyr_3663 0.14 -0.0
4,349,668 - Psyr_3663 0.14 -0.3
4,349,788 - Psyr_3663 0.27 +1.2
4,349,901 + Psyr_3663 0.39 +2.3
4,349,901 + Psyr_3663 0.39 -0.0
4,349,901 + Psyr_3663 0.39 +0.1
4,349,901 + Psyr_3663 0.39 +1.0
4,349,902 - Psyr_3663 0.39 +0.1
4,349,902 - Psyr_3663 0.39 -1.6
4,349,902 - Psyr_3663 0.39 +1.0
4,349,902 - Psyr_3663 0.39 +0.4
4,349,915 + Psyr_3663 0.40 -1.8
4,349,933 + Psyr_3663 0.42 +0.1
4,349,934 - Psyr_3663 0.42 -0.3
4,349,934 - Psyr_3663 0.42 -0.9
4,349,965 - Psyr_3663 0.45 +1.7
4,350,015 + Psyr_3663 0.50 +2.2
4,350,015 + Psyr_3663 0.50 +0.3
4,350,016 - Psyr_3663 0.51 -0.4
4,350,016 - Psyr_3663 0.51 +0.1
4,350,084 - Psyr_3663 0.58 -0.8
4,350,219 + Psyr_3663 0.72 +1.0
4,350,219 + Psyr_3663 0.72 -1.8
4,350,219 + Psyr_3663 0.72 -3.6
4,350,220 - Psyr_3663 0.72 +1.2
4,350,220 - Psyr_3663 0.72 -0.2
4,350,220 - Psyr_3663 0.72 -1.4
4,350,220 - Psyr_3663 0.72 -0.3
4,350,228 + Psyr_3663 0.73 -0.0
4,350,228 + Psyr_3663 0.73 -0.7
4,350,228 + Psyr_3663 0.73 -0.6
4,350,228 + Psyr_3663 0.73 -1.6
4,350,228 + Psyr_3663 0.73 -1.2
4,350,228 + Psyr_3663 0.73 -1.0
4,350,228 + Psyr_3663 0.73 -0.3
4,350,228 + Psyr_3663 0.73 +1.2
4,350,228 + Psyr_3663 0.73 +1.0
4,350,228 + Psyr_3663 0.73 -0.8
4,350,228 + Psyr_3663 0.73 -0.8
4,350,228 + Psyr_3663 0.73 +0.0
4,350,228 + Psyr_3663 0.73 -1.0
4,350,228 + Psyr_3663 0.73 -0.9
4,350,228 + Psyr_3663 0.73 -1.3
4,350,229 - Psyr_3663 0.73 +1.0
4,350,229 - Psyr_3663 0.73 -1.8
4,350,229 - Psyr_3663 0.73 -0.1
4,350,229 - Psyr_3663 0.73 -1.0
4,350,229 - Psyr_3663 0.73 -1.5
4,350,229 - Psyr_3663 0.73 +0.4
4,350,229 - Psyr_3663 0.73 +0.6
4,350,229 - Psyr_3663 0.73 +2.2
4,350,229 - Psyr_3663 0.73 -0.2
4,350,229 - Psyr_3663 0.73 -1.0
4,350,229 - Psyr_3663 0.73 +0.9
4,350,229 - Psyr_3663 0.73 +0.2
4,350,229 - Psyr_3663 0.73 +1.9
4,350,229 - Psyr_3663 0.73 +1.3
4,350,229 - Psyr_3663 0.73 +0.1
4,350,229 - Psyr_3663 0.73 -2.0
4,350,229 - Psyr_3663 0.73 +1.5
4,350,229 - Psyr_3663 0.73 +1.8
4,350,229 - Psyr_3663 0.73 +0.1
4,350,379 + Psyr_3663 0.88 -2.1
4,350,462 + +1.1
4,350,463 - -0.6
4,350,509 + +0.7
4,350,509 + +1.1
4,350,510 - -0.1
4,350,510 - -0.0
4,350,510 - -1.6
4,350,510 - -2.6
4,350,529 - +0.9
4,350,555 - -0.1
4,350,555 - -0.6
4,350,555 - -0.9
4,350,620 - -1.7
4,350,913 + Psyr_3664 0.54 -0.0
4,350,913 + Psyr_3664 0.54 +0.6
4,350,914 - Psyr_3664 0.54 +1.1
4,350,914 - Psyr_3664 0.54 +0.4
4,350,914 - Psyr_3664 0.54 -2.0
4,350,914 - Psyr_3664 0.54 -1.4
4,350,914 - Psyr_3664 0.54 +1.9
4,351,286 + +0.1
4,351,344 - -1.9
4,351,376 + -1.0
4,351,376 + -3.1
4,351,376 + -0.3
4,351,376 + -0.1
4,351,376 + -0.4
4,351,376 + +1.4
4,351,377 - -0.5
4,351,377 - +0.1
4,351,387 + +0.7
4,351,387 + +0.1
4,351,387 + +1.4
4,351,387 + -0.6
4,351,387 + +0.1
4,351,388 - -0.2
4,351,388 - +0.5
4,351,388 - +0.8
4,351,388 - +0.0
4,351,388 - -0.4
4,351,388 - +1.9
4,351,458 - Psyr_3665 0.14 -1.2
4,351,469 + Psyr_3665 0.17 -0.7
4,351,469 + Psyr_3665 0.17 -1.3
4,351,469 + Psyr_3665 0.17 -1.0
4,351,469 + Psyr_3665 0.17 +0.0
4,351,469 + Psyr_3665 0.17 -1.0
4,351,470 - Psyr_3665 0.17 -0.8

Or see this region's nucleotide sequence