Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3509 and Psyr_3510 overlap by 1 nucleotides Psyr_3510 and Psyr_3511 are separated by 167 nucleotides Psyr_3511 and Psyr_3512 overlap by 4 nucleotides
Psyr_3509: Psyr_3509 - Cytochrome B561, bacterial, at 4,184,948 to 4,185,493
_3509
Psyr_3510: Psyr_3510 - conserved hypothetical protein, at 4,185,493 to 4,185,756
_3510
Psyr_3511: Psyr_3511 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,185,924 to 4,186,586
_3511
Psyr_3512: Psyr_3512 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,186,583 to 4,187,956
_3512
Position (kb) 4185
4186
4187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4184.925 kb on + strand at 4184.926 kb on - strand at 4185.017 kb on + strand, within Psyr_3509 at 4185.017 kb on + strand, within Psyr_3509 at 4185.017 kb on + strand, within Psyr_3509 at 4185.018 kb on - strand, within Psyr_3509 at 4185.188 kb on + strand, within Psyr_3509 at 4185.188 kb on + strand, within Psyr_3509 at 4185.188 kb on + strand, within Psyr_3509 at 4185.189 kb on - strand, within Psyr_3509 at 4185.189 kb on - strand, within Psyr_3509 at 4185.266 kb on - strand, within Psyr_3509 at 4185.363 kb on + strand, within Psyr_3509 at 4185.366 kb on + strand, within Psyr_3509 at 4185.367 kb on - strand, within Psyr_3509 at 4185.380 kb on - strand, within Psyr_3509 at 4185.380 kb on - strand, within Psyr_3509 at 4185.380 kb on - strand, within Psyr_3509 at 4185.411 kb on + strand, within Psyr_3509 at 4185.411 kb on + strand, within Psyr_3509 at 4185.412 kb on - strand, within Psyr_3509 at 4185.494 kb on + strand at 4185.494 kb on + strand at 4185.494 kb on + strand at 4185.494 kb on + strand at 4185.540 kb on - strand, within Psyr_3510 at 4185.777 kb on + strand at 4185.788 kb on + strand at 4185.807 kb on + strand at 4185.818 kb on + strand at 4185.819 kb on - strand at 4185.821 kb on + strand at 4185.821 kb on + strand at 4185.821 kb on + strand at 4185.822 kb on - strand at 4185.822 kb on - strand at 4185.822 kb on - strand at 4185.996 kb on + strand, within Psyr_3511 at 4185.996 kb on + strand, within Psyr_3511 at 4185.997 kb on - strand, within Psyr_3511 at 4185.997 kb on - strand, within Psyr_3511 at 4185.997 kb on - strand, within Psyr_3511 at 4185.998 kb on + strand, within Psyr_3511 at 4186.184 kb on + strand, within Psyr_3511 at 4186.215 kb on + strand, within Psyr_3511 at 4186.366 kb on + strand, within Psyr_3511 at 4186.387 kb on - strand, within Psyr_3511 at 4186.458 kb on + strand, within Psyr_3511 at 4186.459 kb on - strand, within Psyr_3511 at 4186.459 kb on - strand, within Psyr_3511 at 4186.563 kb on + strand at 4186.593 kb on + strand at 4186.698 kb on - strand at 4186.785 kb on - strand, within Psyr_3512 at 4187.040 kb on + strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.041 kb on - strand, within Psyr_3512 at 4187.215 kb on - strand, within Psyr_3512
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 4,184,925 + +0.6 4,184,926 - +0.0 4,185,017 + Psyr_3509 0.13 +0.8 4,185,017 + Psyr_3509 0.13 +0.0 4,185,017 + Psyr_3509 0.13 +2.0 4,185,018 - Psyr_3509 0.13 -1.9 4,185,188 + Psyr_3509 0.44 -0.1 4,185,188 + Psyr_3509 0.44 +0.2 4,185,188 + Psyr_3509 0.44 +0.6 4,185,189 - Psyr_3509 0.44 +1.3 4,185,189 - Psyr_3509 0.44 +0.6 4,185,266 - Psyr_3509 0.58 -0.1 4,185,363 + Psyr_3509 0.76 -2.1 4,185,366 + Psyr_3509 0.77 +0.6 4,185,367 - Psyr_3509 0.77 -1.4 4,185,380 - Psyr_3509 0.79 +0.4 4,185,380 - Psyr_3509 0.79 +1.1 4,185,380 - Psyr_3509 0.79 -1.6 4,185,411 + Psyr_3509 0.85 +0.3 4,185,411 + Psyr_3509 0.85 -0.9 4,185,412 - Psyr_3509 0.85 -0.6 4,185,494 + -0.1 4,185,494 + +1.4 4,185,494 + +0.0 4,185,494 + +1.0 4,185,540 - Psyr_3510 0.18 -0.1 4,185,777 + -0.5 4,185,788 + +1.4 4,185,807 + +2.0 4,185,818 + -1.4 4,185,819 - -0.6 4,185,821 + +1.7 4,185,821 + -1.3 4,185,821 + +0.8 4,185,822 - +1.6 4,185,822 - -0.5 4,185,822 - +1.4 4,185,996 + Psyr_3511 0.11 +2.3 4,185,996 + Psyr_3511 0.11 +0.4 4,185,997 - Psyr_3511 0.11 +2.2 4,185,997 - Psyr_3511 0.11 +0.4 4,185,997 - Psyr_3511 0.11 +0.9 4,185,998 + Psyr_3511 0.11 +2.0 4,186,184 + Psyr_3511 0.39 +2.2 4,186,215 + Psyr_3511 0.44 +0.4 4,186,366 + Psyr_3511 0.67 +0.4 4,186,387 - Psyr_3511 0.70 +0.3 4,186,458 + Psyr_3511 0.81 +0.9 4,186,459 - Psyr_3511 0.81 -0.2 4,186,459 - Psyr_3511 0.81 -1.3 4,186,563 + +0.1 4,186,593 + +1.4 4,186,698 - -0.5 4,186,785 - Psyr_3512 0.15 -3.1 4,187,040 + Psyr_3512 0.33 -0.1 4,187,041 - Psyr_3512 0.33 -2.2 4,187,041 - Psyr_3512 0.33 +3.0 4,187,041 - Psyr_3512 0.33 +0.0 4,187,041 - Psyr_3512 0.33 -1.3 4,187,215 - Psyr_3512 0.46 +2.1
Or see this region's nucleotide sequence