Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3341 and Psyr_3342 are separated by 196 nucleotides Psyr_3342 and Psyr_3343 are separated by 404 nucleotides Psyr_3343 and Psyr_3344 are separated by 420 nucleotides
Psyr_3341: Psyr_3341 - hypothetical protein, at 3,997,183 to 3,997,461
_3341
Psyr_3342: Psyr_3342 - conserved hypothetical protein, at 3,997,658 to 3,997,918
_3342
Psyr_3343: Psyr_3343 - GCN5-related N-acetyltransferase, at 3,998,323 to 3,998,820
_3343
Psyr_3344: Psyr_3344 - conserved hypothetical protein, at 3,999,241 to 4,000,131
_3344
Position (kb) 3998
3999 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3997.332 kb on - strand, within Psyr_3341 at 3997.332 kb on - strand, within Psyr_3341 at 3997.334 kb on - strand, within Psyr_3341 at 3997.334 kb on - strand, within Psyr_3341 at 3997.365 kb on + strand, within Psyr_3341 at 3997.366 kb on - strand, within Psyr_3341 at 3997.393 kb on - strand, within Psyr_3341 at 3997.431 kb on + strand, within Psyr_3341 at 3997.622 kb on - strand at 3997.671 kb on + strand at 3997.671 kb on + strand at 3997.672 kb on - strand at 3997.674 kb on + strand at 3997.674 kb on + strand at 3997.675 kb on - strand at 3997.809 kb on - strand, within Psyr_3342 at 3997.809 kb on - strand, within Psyr_3342 at 3997.840 kb on + strand, within Psyr_3342 at 3997.892 kb on + strand, within Psyr_3342 at 3997.924 kb on + strand at 3997.925 kb on - strand at 3997.925 kb on - strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.932 kb on + strand at 3997.933 kb on - strand at 3997.940 kb on + strand at 3997.941 kb on - strand at 3997.941 kb on - strand at 3997.941 kb on - strand at 3997.941 kb on - strand at 3997.978 kb on + strand at 3998.038 kb on - strand at 3998.059 kb on + strand at 3998.060 kb on - strand at 3998.060 kb on - strand at 3998.060 kb on - strand at 3998.115 kb on - strand at 3998.128 kb on - strand at 3998.229 kb on + strand at 3998.325 kb on - strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.334 kb on + strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.335 kb on - strand at 3998.639 kb on - strand, within Psyr_3343 at 3998.720 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.741 kb on + strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.742 kb on - strand, within Psyr_3343 at 3998.821 kb on - strand at 3998.859 kb on + strand at 3998.860 kb on - strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.861 kb on + strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.862 kb on - strand at 3998.931 kb on - strand at 3998.975 kb on + strand at 3999.041 kb on - strand at 3999.075 kb on + strand at 3999.075 kb on + strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.076 kb on - strand at 3999.079 kb on + strand at 3999.090 kb on + strand at 3999.090 kb on + strand at 3999.091 kb on - strand at 3999.098 kb on - strand at 3999.155 kb on + strand at 3999.156 kb on - strand at 3999.156 kb on - strand at 3999.177 kb on + strand at 3999.186 kb on + strand at 3999.186 kb on + strand at 3999.186 kb on + strand at 3999.186 kb on + strand at 3999.187 kb on - strand at 3999.187 kb on - strand at 3999.187 kb on - strand at 3999.381 kb on + strand, within Psyr_3344 at 3999.382 kb on - strand, within Psyr_3344 at 3999.382 kb on - strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.460 kb on + strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.461 kb on - strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.599 kb on + strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.600 kb on - strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.601 kb on + strand, within Psyr_3344 at 3999.602 kb on - strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344 at 3999.670 kb on + strand, within Psyr_3344
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 3,997,332 - Psyr_3341 0.53 +0.7 3,997,332 - Psyr_3341 0.53 +0.3 3,997,334 - Psyr_3341 0.54 -1.1 3,997,334 - Psyr_3341 0.54 +0.0 3,997,365 + Psyr_3341 0.65 +0.3 3,997,366 - Psyr_3341 0.66 -0.5 3,997,393 - Psyr_3341 0.75 -1.2 3,997,431 + Psyr_3341 0.89 +0.5 3,997,622 - +0.1 3,997,671 + +0.5 3,997,671 + +0.2 3,997,672 - -0.0 3,997,674 + +0.6 3,997,674 + +0.7 3,997,675 - +0.2 3,997,809 - Psyr_3342 0.58 -0.7 3,997,809 - Psyr_3342 0.58 +0.1 3,997,840 + Psyr_3342 0.70 -1.0 3,997,892 + Psyr_3342 0.90 -1.5 3,997,924 + -0.5 3,997,925 - +0.0 3,997,925 - +1.2 3,997,932 + +0.1 3,997,932 + -0.1 3,997,932 + -0.8 3,997,932 + -1.0 3,997,932 + +1.3 3,997,933 - +1.3 3,997,940 + -2.2 3,997,941 - -0.1 3,997,941 - +0.7 3,997,941 - -1.8 3,997,941 - +0.0 3,997,978 + +0.2 3,998,038 - -0.2 3,998,059 + -1.0 3,998,060 - +0.0 3,998,060 - +0.2 3,998,060 - -2.3 3,998,115 - -0.0 3,998,128 - +0.3 3,998,229 + +0.5 3,998,325 - -0.5 3,998,334 + +0.1 3,998,334 + +0.3 3,998,334 + -0.0 3,998,334 + -0.2 3,998,334 + -1.9 3,998,334 + -1.5 3,998,334 + +0.5 3,998,334 + +0.6 3,998,334 + -0.4 3,998,335 - -0.4 3,998,335 - +0.3 3,998,335 - -0.2 3,998,335 - -1.5 3,998,335 - +1.6 3,998,639 - Psyr_3343 0.63 +0.5 3,998,720 + Psyr_3343 0.80 -1.3 3,998,741 + Psyr_3343 0.84 +1.2 3,998,741 + Psyr_3343 0.84 +1.9 3,998,741 + Psyr_3343 0.84 +0.8 3,998,741 + Psyr_3343 0.84 +0.9 3,998,741 + Psyr_3343 0.84 -1.4 3,998,741 + Psyr_3343 0.84 +0.6 3,998,741 + Psyr_3343 0.84 -0.3 3,998,741 + Psyr_3343 0.84 -0.5 3,998,741 + Psyr_3343 0.84 +2.0 3,998,741 + Psyr_3343 0.84 -0.3 3,998,741 + Psyr_3343 0.84 -1.0 3,998,741 + Psyr_3343 0.84 +2.2 3,998,741 + Psyr_3343 0.84 -0.1 3,998,742 - Psyr_3343 0.84 +0.2 3,998,742 - Psyr_3343 0.84 +0.9 3,998,742 - Psyr_3343 0.84 +2.4 3,998,742 - Psyr_3343 0.84 +1.0 3,998,742 - Psyr_3343 0.84 +0.7 3,998,742 - Psyr_3343 0.84 +2.3 3,998,742 - Psyr_3343 0.84 +3.8 3,998,742 - Psyr_3343 0.84 +1.9 3,998,742 - Psyr_3343 0.84 -0.5 3,998,742 - Psyr_3343 0.84 +0.5 3,998,821 - -0.2 3,998,859 + +0.7 3,998,860 - +0.5 3,998,861 + -1.0 3,998,861 + +1.0 3,998,861 + -1.8 3,998,861 + +1.0 3,998,861 + -0.2 3,998,862 - +0.2 3,998,862 - -0.9 3,998,862 - +1.5 3,998,862 - -2.7 3,998,862 - -0.8 3,998,862 - +0.2 3,998,931 - +1.5 3,998,975 + +0.4 3,999,041 - +1.6 3,999,075 + -1.3 3,999,075 + +0.2 3,999,076 - -0.8 3,999,076 - -1.1 3,999,076 - +0.5 3,999,076 - +1.4 3,999,076 - +2.0 3,999,079 + -0.5 3,999,090 + +0.2 3,999,090 + +0.0 3,999,091 - -1.7 3,999,098 - -0.7 3,999,155 + +0.5 3,999,156 - +0.2 3,999,156 - +1.6 3,999,177 + +0.0 3,999,186 + -1.8 3,999,186 + +3.6 3,999,186 + +1.6 3,999,186 + +1.9 3,999,187 - -0.0 3,999,187 - -0.5 3,999,187 - +0.5 3,999,381 + Psyr_3344 0.16 +1.2 3,999,382 - Psyr_3344 0.16 -1.3 3,999,382 - Psyr_3344 0.16 -0.4 3,999,460 + Psyr_3344 0.25 +1.2 3,999,460 + Psyr_3344 0.25 +2.0 3,999,460 + Psyr_3344 0.25 +0.0 3,999,460 + Psyr_3344 0.25 -0.5 3,999,460 + Psyr_3344 0.25 -0.9 3,999,461 - Psyr_3344 0.25 -1.5 3,999,461 - Psyr_3344 0.25 -2.0 3,999,461 - Psyr_3344 0.25 -1.2 3,999,461 - Psyr_3344 0.25 -1.7 3,999,461 - Psyr_3344 0.25 -0.2 3,999,599 + Psyr_3344 0.40 -0.3 3,999,599 + Psyr_3344 0.40 +0.4 3,999,599 + Psyr_3344 0.40 +0.5 3,999,599 + Psyr_3344 0.40 +2.6 3,999,599 + Psyr_3344 0.40 +0.7 3,999,599 + Psyr_3344 0.40 +0.3 3,999,599 + Psyr_3344 0.40 +1.4 3,999,599 + Psyr_3344 0.40 -0.5 3,999,599 + Psyr_3344 0.40 +0.3 3,999,599 + Psyr_3344 0.40 +3.8 3,999,599 + Psyr_3344 0.40 +0.9 3,999,599 + Psyr_3344 0.40 +0.2 3,999,600 - Psyr_3344 0.40 +1.6 3,999,600 - Psyr_3344 0.40 -1.4 3,999,600 - Psyr_3344 0.40 -0.7 3,999,600 - Psyr_3344 0.40 +0.9 3,999,600 - Psyr_3344 0.40 +2.2 3,999,600 - Psyr_3344 0.40 -1.7 3,999,600 - Psyr_3344 0.40 +0.3 3,999,600 - Psyr_3344 0.40 +0.3 3,999,600 - Psyr_3344 0.40 -0.2 3,999,600 - Psyr_3344 0.40 +0.1 3,999,600 - Psyr_3344 0.40 +1.4 3,999,601 + Psyr_3344 0.40 +0.4 3,999,601 + Psyr_3344 0.40 +0.7 3,999,601 + Psyr_3344 0.40 -0.5 3,999,601 + Psyr_3344 0.40 -0.1 3,999,601 + Psyr_3344 0.40 -2.7 3,999,602 - Psyr_3344 0.41 +0.3 3,999,670 + Psyr_3344 0.48 +0.0 3,999,670 + Psyr_3344 0.48 +1.7 3,999,670 + Psyr_3344 0.48 +0.1 3,999,670 + Psyr_3344 0.48 -0.4
Or see this region's nucleotide sequence