Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2591

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2589 and Psyr_2590 overlap by 11 nucleotidesPsyr_2590 and Psyr_2591 overlap by 4 nucleotidesPsyr_2591 and Psyr_2592 overlap by 8 nucleotides Psyr_2589: Psyr_2589 - IucA/IucC, at 3,034,919 to 3,036,802 _2589 Psyr_2590: Psyr_2590 - Periplasmic binding protein, at 3,036,792 to 3,037,697 _2590 Psyr_2591: Psyr_2591 - transport system permease protein, at 3,037,694 to 3,038,683 _2591 Psyr_2592: Psyr_2592 - transport system permease protein, at 3,038,676 to 3,039,707 _2592 Position (kb) 3037 3038 3039Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3036.828 kb on - strandat 3036.987 kb on + strand, within Psyr_2590at 3036.987 kb on + strand, within Psyr_2590at 3036.988 kb on - strand, within Psyr_2590at 3036.988 kb on - strand, within Psyr_2590at 3037.350 kb on + strand, within Psyr_2590at 3037.350 kb on + strand, within Psyr_2590at 3037.591 kb on + strand, within Psyr_2590at 3037.867 kb on + strand, within Psyr_2591at 3037.868 kb on - strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.014 kb on + strand, within Psyr_2591at 3038.015 kb on - strand, within Psyr_2591at 3038.378 kb on - strand, within Psyr_2591at 3038.409 kb on + strand, within Psyr_2591at 3038.463 kb on + strand, within Psyr_2591at 3038.463 kb on + strand, within Psyr_2591at 3038.464 kb on - strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.482 kb on + strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.483 kb on - strand, within Psyr_2591at 3038.779 kb on + strandat 3039.031 kb on - strand, within Psyr_2592at 3039.031 kb on - strand, within Psyr_2592at 3039.031 kb on - strand, within Psyr_2592at 3039.031 kb on - strand, within Psyr_2592at 3039.031 kb on - strand, within Psyr_2592at 3039.118 kb on - strand, within Psyr_2592at 3039.118 kb on - strand, within Psyr_2592at 3039.249 kb on + strand, within Psyr_2592at 3039.249 kb on + strand, within Psyr_2592at 3039.249 kb on + strand, within Psyr_2592at 3039.250 kb on - strand, within Psyr_2592at 3039.273 kb on + strand, within Psyr_2592at 3039.273 kb on + strand, within Psyr_2592at 3039.273 kb on + strand, within Psyr_2592at 3039.273 kb on + strand, within Psyr_2592at 3039.274 kb on - strand, within Psyr_2592at 3039.274 kb on - strand, within Psyr_2592at 3039.682 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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3,036,828 - -2.3
3,036,987 + Psyr_2590 0.22 +2.9
3,036,987 + Psyr_2590 0.22 -0.7
3,036,988 - Psyr_2590 0.22 -2.0
3,036,988 - Psyr_2590 0.22 -1.9
3,037,350 + Psyr_2590 0.62 -1.3
3,037,350 + Psyr_2590 0.62 -1.0
3,037,591 + Psyr_2590 0.88 -2.0
3,037,867 + Psyr_2591 0.17 -1.3
3,037,868 - Psyr_2591 0.18 +1.3
3,038,014 + Psyr_2591 0.32 +0.2
3,038,014 + Psyr_2591 0.32 +0.4
3,038,014 + Psyr_2591 0.32 -2.4
3,038,014 + Psyr_2591 0.32 -2.8
3,038,015 - Psyr_2591 0.32 -1.3
3,038,378 - Psyr_2591 0.69 -1.2
3,038,409 + Psyr_2591 0.72 +1.3
3,038,463 + Psyr_2591 0.78 +1.4
3,038,463 + Psyr_2591 0.78 -2.6
3,038,464 - Psyr_2591 0.78 -0.2
3,038,482 + Psyr_2591 0.80 -2.3
3,038,482 + Psyr_2591 0.80 -0.7
3,038,482 + Psyr_2591 0.80 +0.3
3,038,482 + Psyr_2591 0.80 -1.1
3,038,482 + Psyr_2591 0.80 +1.3
3,038,482 + Psyr_2591 0.80 -1.0
3,038,483 - Psyr_2591 0.80 -1.4
3,038,483 - Psyr_2591 0.80 -0.1
3,038,483 - Psyr_2591 0.80 -1.0
3,038,483 - Psyr_2591 0.80 -0.9
3,038,483 - Psyr_2591 0.80 -0.9
3,038,483 - Psyr_2591 0.80 -1.0
3,038,483 - Psyr_2591 0.80 -1.5
3,038,779 + -1.3
3,039,031 - Psyr_2592 0.34 +1.3
3,039,031 - Psyr_2592 0.34 -2.3
3,039,031 - Psyr_2592 0.34 -0.4
3,039,031 - Psyr_2592 0.34 -1.7
3,039,031 - Psyr_2592 0.34 -1.4
3,039,118 - Psyr_2592 0.43 -1.7
3,039,118 - Psyr_2592 0.43 -0.0
3,039,249 + Psyr_2592 0.56 -0.3
3,039,249 + Psyr_2592 0.56 +0.3
3,039,249 + Psyr_2592 0.56 -1.5
3,039,250 - Psyr_2592 0.56 +1.5
3,039,273 + Psyr_2592 0.58 -1.5
3,039,273 + Psyr_2592 0.58 -0.5
3,039,273 + Psyr_2592 0.58 -2.0
3,039,273 + Psyr_2592 0.58 +1.3
3,039,274 - Psyr_2592 0.58 -1.6
3,039,274 - Psyr_2592 0.58 -2.0
3,039,682 - +0.4

Or see this region's nucleotide sequence