Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32590

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32580 and AZOBR_RS32585 are separated by 116 nucleotidesAZOBR_RS32585 and AZOBR_RS32590 are separated by 277 nucleotidesAZOBR_RS32590 and AZOBR_RS32595 are separated by 9 nucleotides AZOBR_RS32580: AZOBR_RS32580 - hypothetical protein, at 672,573 to 675,209 _RS32580 AZOBR_RS32585: AZOBR_RS32585 - exported protein of unknown function, at 675,326 to 675,907 _RS32585 AZOBR_RS32590: AZOBR_RS32590 - circadian clock protein KaiC, at 676,185 to 677,678 _RS32590 AZOBR_RS32595: AZOBR_RS32595 - sensor protein, at 677,688 to 679,358 _RS32595 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2 3at 675.214 kb on - strandat 675.250 kb on - strandat 675.273 kb on - strandat 675.273 kb on - strandat 675.444 kb on - strand, within AZOBR_RS32585at 675.444 kb on - strand, within AZOBR_RS32585at 675.449 kb on + strand, within AZOBR_RS32585at 675.961 kb on + strandat 676.365 kb on + strand, within AZOBR_RS32590at 676.365 kb on + strand, within AZOBR_RS32590at 676.365 kb on + strand, within AZOBR_RS32590at 676.365 kb on + strand, within AZOBR_RS32590at 676.365 kb on + strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.366 kb on - strand, within AZOBR_RS32590at 676.827 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.043 kb on + strand, within AZOBR_RS32590at 677.044 kb on - strand, within AZOBR_RS32590at 677.044 kb on - strand, within AZOBR_RS32590at 677.044 kb on - strand, within AZOBR_RS32590at 677.044 kb on - strand, within AZOBR_RS32590at 677.082 kb on + strand, within AZOBR_RS32590at 677.083 kb on - strand, within AZOBR_RS32590at 677.290 kb on - strand, within AZOBR_RS32590at 677.290 kb on - strand, within AZOBR_RS32590at 677.349 kb on + strand, within AZOBR_RS32590at 677.349 kb on + strand, within AZOBR_RS32590at 677.349 kb on + strand, within AZOBR_RS32590at 677.350 kb on - strand, within AZOBR_RS32590at 677.350 kb on - strand, within AZOBR_RS32590at 677.628 kb on + strandat 677.628 kb on + strandat 677.628 kb on + strandat 677.628 kb on + strandat 677.629 kb on - strandat 677.629 kb on - strandat 677.629 kb on - strandat 677.629 kb on - strandat 677.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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675,214 - +0.6
675,250 - -0.2
675,273 - -0.6
675,273 - -2.5
675,444 - AZOBR_RS32585 0.20 +0.5
675,444 - AZOBR_RS32585 0.20 +1.1
675,449 + AZOBR_RS32585 0.21 +0.5
675,961 + -0.1
676,365 + AZOBR_RS32590 0.12 -0.1
676,365 + AZOBR_RS32590 0.12 -2.4
676,365 + AZOBR_RS32590 0.12 +0.4
676,365 + AZOBR_RS32590 0.12 -0.3
676,365 + AZOBR_RS32590 0.12 -0.8
676,366 - AZOBR_RS32590 0.12 +1.5
676,366 - AZOBR_RS32590 0.12 +0.7
676,366 - AZOBR_RS32590 0.12 +1.0
676,366 - AZOBR_RS32590 0.12 +0.7
676,366 - AZOBR_RS32590 0.12 +1.7
676,366 - AZOBR_RS32590 0.12 +0.2
676,366 - AZOBR_RS32590 0.12 -1.1
676,827 + AZOBR_RS32590 0.43 -0.5
677,043 + AZOBR_RS32590 0.57 +1.9
677,043 + AZOBR_RS32590 0.57 +0.7
677,043 + AZOBR_RS32590 0.57 +2.8
677,043 + AZOBR_RS32590 0.57 +0.1
677,043 + AZOBR_RS32590 0.57 +0.1
677,043 + AZOBR_RS32590 0.57 +0.5
677,043 + AZOBR_RS32590 0.57 -1.0
677,043 + AZOBR_RS32590 0.57 -0.8
677,044 - AZOBR_RS32590 0.57 +0.4
677,044 - AZOBR_RS32590 0.57 -2.1
677,044 - AZOBR_RS32590 0.57 +2.0
677,044 - AZOBR_RS32590 0.57 +0.3
677,082 + AZOBR_RS32590 0.60 +1.8
677,083 - AZOBR_RS32590 0.60 -0.5
677,290 - AZOBR_RS32590 0.74 -2.0
677,290 - AZOBR_RS32590 0.74 -1.3
677,349 + AZOBR_RS32590 0.78 -1.6
677,349 + AZOBR_RS32590 0.78 -0.9
677,349 + AZOBR_RS32590 0.78 +0.3
677,350 - AZOBR_RS32590 0.78 +0.5
677,350 - AZOBR_RS32590 0.78 +1.4
677,628 + -0.7
677,628 + +0.7
677,628 + +1.9
677,628 + +1.3
677,629 - -0.3
677,629 - -1.2
677,629 - -1.4
677,629 - +1.1
677,629 - +0.4

Or see this region's nucleotide sequence