Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31945 and AZOBR_RS31950 are separated by 41 nucleotides AZOBR_RS31950 and AZOBR_RS31955 are separated by 340 nucleotides
AZOBR_RS31945: AZOBR_RS31945 - oxalyl-CoA decarboxylase, at 533,168 to 534,925
_RS31945
AZOBR_RS31950: AZOBR_RS31950 - GntR family transcriptional regulator, at 534,967 to 535,656
_RS31950
AZOBR_RS31955: AZOBR_RS31955 - lipid kinase, at 535,997 to 536,881
_RS31955
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 534.397 kb on - strand, within AZOBR_RS31945 at 534.531 kb on + strand, within AZOBR_RS31945 at 534.531 kb on + strand, within AZOBR_RS31945 at 534.531 kb on + strand, within AZOBR_RS31945 at 534.532 kb on - strand, within AZOBR_RS31945 at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.804 kb on + strand at 534.805 kb on - strand at 534.805 kb on - strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.925 kb on + strand at 534.926 kb on - strand at 534.932 kb on + strand at 534.933 kb on - strand at 534.933 kb on - strand at 534.949 kb on + strand at 534.950 kb on - strand at 535.553 kb on + strand, within AZOBR_RS31950 at 535.553 kb on + strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.554 kb on - strand, within AZOBR_RS31950 at 535.593 kb on - strand at 535.593 kb on - strand at 536.012 kb on + strand at 536.012 kb on + strand at 536.012 kb on + strand at 536.013 kb on - strand at 536.013 kb on - strand at 536.223 kb on + strand, within AZOBR_RS31955 at 536.224 kb on - strand, within AZOBR_RS31955
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 534,397 - AZOBR_RS31945 0.70 +1.0 534,531 + AZOBR_RS31945 0.78 -0.8 534,531 + AZOBR_RS31945 0.78 -2.5 534,531 + AZOBR_RS31945 0.78 -3.1 534,532 - AZOBR_RS31945 0.78 +0.1 534,804 + +1.7 534,804 + -0.1 534,804 + +1.2 534,804 + +0.6 534,804 + -0.5 534,804 + -0.2 534,805 - -1.0 534,805 - +0.5 534,925 + -0.4 534,925 + +0.6 534,925 + +1.5 534,925 + +1.0 534,925 + -1.7 534,926 - +1.1 534,932 + -0.0 534,933 - +3.3 534,933 - +1.6 534,949 + +0.7 534,950 - +0.6 535,553 + AZOBR_RS31950 0.85 -1.3 535,553 + AZOBR_RS31950 0.85 +3.5 535,554 - AZOBR_RS31950 0.85 +3.3 535,554 - AZOBR_RS31950 0.85 +0.4 535,554 - AZOBR_RS31950 0.85 -2.9 535,554 - AZOBR_RS31950 0.85 +1.1 535,593 - +0.0 535,593 - -0.1 536,012 + -1.4 536,012 + -1.5 536,012 + +0.2 536,013 - -0.2 536,013 - +1.6 536,223 + AZOBR_RS31955 0.26 +0.9 536,224 - AZOBR_RS31955 0.26 -0.2
Or see this region's nucleotide sequence