Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS31405 and AZOBR_RS31410 are separated by 401 nucleotides AZOBR_RS31410 and AZOBR_RS31415 are separated by 94 nucleotides
AZOBR_RS31405: AZOBR_RS31405 - C4-dicarboxylate ABC transporter permease, at 413,555 to 414,043
_RS31405
AZOBR_RS31410: AZOBR_RS31410 - aldo/keto reductase, at 414,445 to 415,506
_RS31410
AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383
_RS31415
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.867 kb on + strand, within AZOBR_RS31405 at 413.867 kb on + strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.904 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 413.907 kb on - strand, within AZOBR_RS31405 at 414.308 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.344 kb on + strand at 414.345 kb on - strand at 414.345 kb on - strand at 414.803 kb on + strand, within AZOBR_RS31410 at 414.803 kb on + strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.804 kb on - strand, within AZOBR_RS31410 at 414.914 kb on + strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 414.993 kb on - strand, within AZOBR_RS31410 at 415.010 kb on + strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.011 kb on - strand, within AZOBR_RS31410 at 415.094 kb on + strand, within AZOBR_RS31410 at 415.109 kb on + strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.110 kb on - strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.157 kb on + strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.158 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.182 kb on - strand, within AZOBR_RS31410 at 415.202 kb on + strand, within AZOBR_RS31410 at 415.203 kb on - strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.304 kb on + strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.305 kb on - strand, within AZOBR_RS31410 at 415.457 kb on + strand at 415.494 kb on - strand at 415.557 kb on - strand at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 415.687 kb on - strand, within AZOBR_RS31415 at 416.178 kb on + strand, within AZOBR_RS31415 at 416.179 kb on - strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415 at 416.259 kb on + strand, within AZOBR_RS31415
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 413,867 + AZOBR_RS31405 0.64 +0.9 413,867 + AZOBR_RS31405 0.64 -3.6 413,904 - AZOBR_RS31405 0.71 +0.6 413,904 - AZOBR_RS31405 0.71 +0.1 413,904 - AZOBR_RS31405 0.71 -0.3 413,904 - AZOBR_RS31405 0.71 +0.5 413,904 - AZOBR_RS31405 0.71 -1.3 413,907 - AZOBR_RS31405 0.72 -0.2 413,907 - AZOBR_RS31405 0.72 +0.5 413,907 - AZOBR_RS31405 0.72 -1.2 413,907 - AZOBR_RS31405 0.72 -0.2 413,907 - AZOBR_RS31405 0.72 +1.2 413,907 - AZOBR_RS31405 0.72 +0.9 413,907 - AZOBR_RS31405 0.72 -1.6 413,907 - AZOBR_RS31405 0.72 -0.1 414,308 + +2.2 414,344 + +1.1 414,344 + +1.5 414,344 + +0.8 414,344 + -0.5 414,344 + +1.1 414,344 + +1.2 414,345 - +1.3 414,345 - -2.0 414,803 + AZOBR_RS31410 0.34 +0.3 414,803 + AZOBR_RS31410 0.34 +0.5 414,804 - AZOBR_RS31410 0.34 -1.6 414,804 - AZOBR_RS31410 0.34 -3.4 414,804 - AZOBR_RS31410 0.34 -2.7 414,914 + AZOBR_RS31410 0.44 -1.1 414,993 - AZOBR_RS31410 0.52 -1.5 414,993 - AZOBR_RS31410 0.52 -0.2 415,010 + AZOBR_RS31410 0.53 -2.5 415,011 - AZOBR_RS31410 0.53 +0.5 415,011 - AZOBR_RS31410 0.53 +0.0 415,011 - AZOBR_RS31410 0.53 +2.5 415,011 - AZOBR_RS31410 0.53 +0.2 415,094 + AZOBR_RS31410 0.61 +0.0 415,109 + AZOBR_RS31410 0.63 -0.8 415,110 - AZOBR_RS31410 0.63 +0.9 415,110 - AZOBR_RS31410 0.63 +1.1 415,157 + AZOBR_RS31410 0.67 -1.1 415,157 + AZOBR_RS31410 0.67 -1.9 415,157 + AZOBR_RS31410 0.67 -0.4 415,157 + AZOBR_RS31410 0.67 +1.2 415,158 - AZOBR_RS31410 0.67 -1.4 415,158 - AZOBR_RS31410 0.67 +0.2 415,158 - AZOBR_RS31410 0.67 -1.5 415,158 - AZOBR_RS31410 0.67 +1.7 415,182 - AZOBR_RS31410 0.69 -0.5 415,182 - AZOBR_RS31410 0.69 +0.4 415,202 + AZOBR_RS31410 0.71 -0.7 415,203 - AZOBR_RS31410 0.71 +0.9 415,304 + AZOBR_RS31410 0.81 +1.5 415,304 + AZOBR_RS31410 0.81 -0.1 415,305 - AZOBR_RS31410 0.81 -0.2 415,305 - AZOBR_RS31410 0.81 -2.1 415,305 - AZOBR_RS31410 0.81 +0.6 415,305 - AZOBR_RS31410 0.81 -1.1 415,305 - AZOBR_RS31410 0.81 -1.1 415,457 + -0.1 415,494 - -1.0 415,557 - -0.2 415,687 - AZOBR_RS31415 0.11 +0.8 415,687 - AZOBR_RS31415 0.11 +1.5 415,687 - AZOBR_RS31415 0.11 +1.6 415,687 - AZOBR_RS31415 0.11 +2.3 416,178 + AZOBR_RS31415 0.74 +1.6 416,179 - AZOBR_RS31415 0.74 +1.5 416,259 + AZOBR_RS31415 0.84 +1.6 416,259 + AZOBR_RS31415 0.84 +1.4
Or see this region's nucleotide sequence