Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30505 and AZOBR_RS30510 are separated by 379 nucleotides AZOBR_RS30510 and AZOBR_RS30515 are separated by 387 nucleotides
AZOBR_RS30505: AZOBR_RS30505 - transcriptional regulator, at 190,870 to 191,565
_RS30505
AZOBR_RS30510: AZOBR_RS30510 - heme iron utilization protein, at 191,945 to 192,664
_RS30510
AZOBR_RS30515: AZOBR_RS30515 - phosphoenolpyruvate carboxykinase, at 193,052 to 194,875
_RS30515
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 190.991 kb on + strand, within AZOBR_RS30505 at 191.006 kb on + strand, within AZOBR_RS30505 at 191.270 kb on + strand, within AZOBR_RS30505 at 191.270 kb on + strand, within AZOBR_RS30505 at 191.271 kb on - strand, within AZOBR_RS30505 at 191.271 kb on - strand, within AZOBR_RS30505 at 191.271 kb on - strand, within AZOBR_RS30505 at 191.271 kb on - strand, within AZOBR_RS30505 at 191.472 kb on - strand, within AZOBR_RS30505 at 191.472 kb on - strand, within AZOBR_RS30505 at 191.551 kb on + strand at 191.552 kb on - strand at 191.716 kb on + strand at 191.783 kb on + strand at 191.799 kb on + strand at 192.287 kb on + strand, within AZOBR_RS30510 at 192.479 kb on + strand, within AZOBR_RS30510 at 192.479 kb on + strand, within AZOBR_RS30510 at 192.479 kb on + strand, within AZOBR_RS30510 at 192.961 kb on + strand at 192.962 kb on - strand at 193.238 kb on + strand, within AZOBR_RS30515 at 193.238 kb on + strand, within AZOBR_RS30515 at 193.239 kb on - strand, within AZOBR_RS30515 at 193.289 kb on + strand, within AZOBR_RS30515 at 193.289 kb on + strand, within AZOBR_RS30515 at 193.289 kb on + strand, within AZOBR_RS30515 at 193.289 kb on + strand, within AZOBR_RS30515 at 193.289 kb on + strand, within AZOBR_RS30515 at 193.290 kb on - strand, within AZOBR_RS30515 at 193.290 kb on - strand, within AZOBR_RS30515 at 193.290 kb on - strand at 193.290 kb on - strand, within AZOBR_RS30515 at 193.290 kb on - strand, within AZOBR_RS30515 at 193.290 kb on - strand, within AZOBR_RS30515 at 193.290 kb on - strand, within AZOBR_RS30515 at 193.290 kb on - strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.406 kb on + strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.407 kb on - strand, within AZOBR_RS30515 at 193.482 kb on - strand, within AZOBR_RS30515 at 193.482 kb on - strand, within AZOBR_RS30515 at 193.637 kb on + strand, within AZOBR_RS30515 at 193.637 kb on + strand, within AZOBR_RS30515 at 193.637 kb on + strand, within AZOBR_RS30515 at 193.637 kb on + strand, within AZOBR_RS30515 at 193.637 kb on + strand, within AZOBR_RS30515 at 193.638 kb on - strand, within AZOBR_RS30515 at 193.638 kb on - strand, within AZOBR_RS30515 at 193.638 kb on - strand, within AZOBR_RS30515 at 193.638 kb on - strand, within AZOBR_RS30515 at 193.638 kb on - strand, within AZOBR_RS30515 at 193.638 kb on - strand, within AZOBR_RS30515
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 190,991 + AZOBR_RS30505 0.17 -2.4 191,006 + AZOBR_RS30505 0.20 -0.1 191,270 + AZOBR_RS30505 0.57 -2.2 191,270 + AZOBR_RS30505 0.57 -0.6 191,271 - AZOBR_RS30505 0.58 -0.3 191,271 - AZOBR_RS30505 0.58 +0.4 191,271 - AZOBR_RS30505 0.58 +0.6 191,271 - AZOBR_RS30505 0.58 -0.3 191,472 - AZOBR_RS30505 0.86 -1.8 191,472 - AZOBR_RS30505 0.86 -3.0 191,551 + +0.3 191,552 - -0.1 191,716 + -0.6 191,783 + +0.4 191,799 + +1.2 192,287 + AZOBR_RS30510 0.47 -0.9 192,479 + AZOBR_RS30510 0.74 +1.3 192,479 + AZOBR_RS30510 0.74 +0.1 192,479 + AZOBR_RS30510 0.74 +0.2 192,961 + +1.0 192,962 - +1.4 193,238 + AZOBR_RS30515 0.10 +1.5 193,238 + AZOBR_RS30515 0.10 +0.7 193,239 - AZOBR_RS30515 0.10 +1.4 193,289 + AZOBR_RS30515 0.13 +0.6 193,289 + AZOBR_RS30515 0.13 +3.5 193,289 + AZOBR_RS30515 0.13 +1.4 193,289 + AZOBR_RS30515 0.13 +1.6 193,289 + AZOBR_RS30515 0.13 +1.9 193,290 - AZOBR_RS30515 0.13 +0.6 193,290 - AZOBR_RS30515 0.13 +2.3 193,290 - +0.4 193,290 - AZOBR_RS30515 0.13 +1.7 193,290 - AZOBR_RS30515 0.13 +1.4 193,290 - AZOBR_RS30515 0.13 +3.3 193,290 - AZOBR_RS30515 0.13 +1.6 193,290 - AZOBR_RS30515 0.13 +0.9 193,406 + AZOBR_RS30515 0.19 +1.8 193,406 + AZOBR_RS30515 0.19 +1.0 193,406 + AZOBR_RS30515 0.19 +2.0 193,406 + AZOBR_RS30515 0.19 +1.8 193,406 + AZOBR_RS30515 0.19 +0.8 193,406 + AZOBR_RS30515 0.19 +2.3 193,406 + AZOBR_RS30515 0.19 +1.7 193,406 + AZOBR_RS30515 0.19 +0.8 193,406 + AZOBR_RS30515 0.19 +0.8 193,406 + AZOBR_RS30515 0.19 +2.1 193,406 + AZOBR_RS30515 0.19 +1.7 193,406 + AZOBR_RS30515 0.19 +0.8 193,406 + AZOBR_RS30515 0.19 +2.0 193,406 + AZOBR_RS30515 0.19 +0.2 193,406 + AZOBR_RS30515 0.19 +7.9 193,407 - AZOBR_RS30515 0.19 -0.2 193,407 - AZOBR_RS30515 0.19 -0.0 193,407 - AZOBR_RS30515 0.19 +1.4 193,407 - AZOBR_RS30515 0.19 +2.6 193,407 - AZOBR_RS30515 0.19 +0.1 193,407 - AZOBR_RS30515 0.19 +1.6 193,407 - AZOBR_RS30515 0.19 +1.9 193,407 - AZOBR_RS30515 0.19 +1.5 193,407 - AZOBR_RS30515 0.19 +1.5 193,407 - AZOBR_RS30515 0.19 +2.4 193,407 - AZOBR_RS30515 0.19 +1.3 193,407 - AZOBR_RS30515 0.19 +2.4 193,482 - AZOBR_RS30515 0.24 +2.2 193,482 - AZOBR_RS30515 0.24 +1.4 193,637 + AZOBR_RS30515 0.32 +0.5 193,637 + AZOBR_RS30515 0.32 +1.3 193,637 + AZOBR_RS30515 0.32 +1.8 193,637 + AZOBR_RS30515 0.32 +1.1 193,637 + AZOBR_RS30515 0.32 +1.3 193,638 - AZOBR_RS30515 0.32 +1.7 193,638 - AZOBR_RS30515 0.32 +0.3 193,638 - AZOBR_RS30515 0.32 +1.8 193,638 - AZOBR_RS30515 0.32 +1.6 193,638 - AZOBR_RS30515 0.32 +1.3 193,638 - AZOBR_RS30515 0.32 +2.6
Or see this region's nucleotide sequence