Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29175 and AZOBR_RS29180 are separated by 344 nucleotides
AZOBR_RS29175: AZOBR_RS29175 - IclR family transcriptional regulator, at 671,286 to 672,074
_RS29175
AZOBR_RS29180: AZOBR_RS29180 - CoA-transferase, at 672,419 to 673,660
_RS29180
Position (kb) 671
672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 670.292 kb on + strand at 670.292 kb on + strand at 670.292 kb on + strand at 670.293 kb on - strand at 670.293 kb on - strand at 670.293 kb on - strand at 670.293 kb on - strand at 670.376 kb on + strand at 670.376 kb on + strand at 670.377 kb on - strand at 670.377 kb on - strand at 670.377 kb on - strand at 670.535 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.669 kb on + strand at 670.670 kb on - strand at 670.670 kb on - strand at 670.678 kb on + strand at 670.679 kb on - strand at 670.919 kb on + strand at 670.919 kb on + strand at 670.920 kb on - strand at 670.920 kb on - strand at 670.955 kb on + strand at 670.956 kb on - strand at 670.956 kb on - strand at 670.956 kb on - strand at 670.956 kb on - strand at 670.956 kb on - strand at 671.068 kb on + strand at 671.068 kb on + strand at 671.345 kb on + strand at 671.346 kb on - strand at 671.346 kb on - strand at 671.346 kb on - strand at 671.470 kb on + strand, within AZOBR_RS29175 at 671.471 kb on - strand, within AZOBR_RS29175 at 671.486 kb on - strand, within AZOBR_RS29175 at 671.486 kb on - strand, within AZOBR_RS29175 at 671.641 kb on + strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.885 kb on - strand, within AZOBR_RS29175 at 671.914 kb on + strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 671.915 kb on - strand, within AZOBR_RS29175 at 672.095 kb on + strand at 672.227 kb on - strand at 672.615 kb on - strand, within AZOBR_RS29180 at 672.617 kb on + strand, within AZOBR_RS29180 at 672.617 kb on + strand, within AZOBR_RS29180 at 672.617 kb on + strand, within AZOBR_RS29180 at 672.618 kb on - strand, within AZOBR_RS29180 at 672.618 kb on - strand, within AZOBR_RS29180 at 672.618 kb on - strand, within AZOBR_RS29180 at 672.800 kb on + strand, within AZOBR_RS29180 at 672.801 kb on - strand, within AZOBR_RS29180 at 672.836 kb on + strand, within AZOBR_RS29180 at 672.836 kb on + strand, within AZOBR_RS29180 at 672.836 kb on + strand, within AZOBR_RS29180 at 672.854 kb on + strand, within AZOBR_RS29180 at 672.974 kb on + strand, within AZOBR_RS29180 at 672.974 kb on + strand, within AZOBR_RS29180 at 672.975 kb on - strand, within AZOBR_RS29180
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 670,292 + +2.1 670,292 + +1.1 670,292 + +1.7 670,293 - +0.8 670,293 - +0.8 670,293 - -0.9 670,293 - +0.0 670,376 + +1.0 670,376 + -2.9 670,377 - -0.4 670,377 - +0.7 670,377 - -0.7 670,535 + -0.5 670,669 + -0.6 670,669 + -1.3 670,669 + -0.3 670,669 + -0.3 670,669 + -1.4 670,670 - +0.3 670,670 - -1.0 670,678 + +1.8 670,679 - -1.3 670,919 + -0.2 670,919 + -1.6 670,920 - +0.1 670,920 - -3.8 670,955 + -0.5 670,956 - +0.2 670,956 - -0.1 670,956 - -0.2 670,956 - -0.6 670,956 - -0.2 671,068 + -0.4 671,068 + +0.4 671,345 + -0.6 671,346 - +1.0 671,346 - -0.2 671,346 - +0.1 671,470 + AZOBR_RS29175 0.23 -1.3 671,471 - AZOBR_RS29175 0.23 -1.4 671,486 - AZOBR_RS29175 0.25 +0.7 671,486 - AZOBR_RS29175 0.25 +0.5 671,641 + AZOBR_RS29175 0.45 +1.2 671,885 - AZOBR_RS29175 0.76 +1.9 671,885 - AZOBR_RS29175 0.76 +0.5 671,885 - AZOBR_RS29175 0.76 -0.8 671,885 - AZOBR_RS29175 0.76 +0.6 671,914 + AZOBR_RS29175 0.80 +1.4 671,915 - AZOBR_RS29175 0.80 +0.0 671,915 - AZOBR_RS29175 0.80 +0.5 671,915 - AZOBR_RS29175 0.80 -0.6 671,915 - AZOBR_RS29175 0.80 +1.7 671,915 - AZOBR_RS29175 0.80 -0.5 672,095 + -1.9 672,227 - -1.6 672,615 - AZOBR_RS29180 0.16 -1.4 672,617 + AZOBR_RS29180 0.16 +0.5 672,617 + AZOBR_RS29180 0.16 +1.0 672,617 + AZOBR_RS29180 0.16 +0.8 672,618 - AZOBR_RS29180 0.16 -0.1 672,618 - AZOBR_RS29180 0.16 -0.1 672,618 - AZOBR_RS29180 0.16 -0.5 672,800 + AZOBR_RS29180 0.31 +0.8 672,801 - AZOBR_RS29180 0.31 +1.0 672,836 + AZOBR_RS29180 0.34 +2.4 672,836 + AZOBR_RS29180 0.34 +1.1 672,836 + AZOBR_RS29180 0.34 -0.6 672,854 + AZOBR_RS29180 0.35 +1.4 672,974 + AZOBR_RS29180 0.45 -0.0 672,974 + AZOBR_RS29180 0.45 +2.4 672,975 - AZOBR_RS29180 0.45 -2.1
Or see this region's nucleotide sequence