Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28345 and AZOBR_RS28350 are separated by 8 nucleotides AZOBR_RS28350 and AZOBR_RS28355 are separated by 312 nucleotides
AZOBR_RS28345: AZOBR_RS28345 - phosphoglycerate mutase, at 532,177 to 532,773
_RS28345
AZOBR_RS28350: AZOBR_RS28350 - inositol-3-phosphate synthase, at 532,782 to 533,885
_RS28350
AZOBR_RS28355: AZOBR_RS28355 - dehydratase, at 534,198 to 535,310
_RS28355
Position (kb) 532
533
534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 531.783 kb on + strand at 531.972 kb on + strand at 531.972 kb on + strand at 531.973 kb on - strand at 532.888 kb on + strand at 532.889 kb on - strand at 532.889 kb on - strand at 533.105 kb on + strand, within AZOBR_RS28350 at 533.106 kb on - strand, within AZOBR_RS28350 at 533.239 kb on + strand, within AZOBR_RS28350 at 533.239 kb on + strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.389 kb on - strand, within AZOBR_RS28350 at 533.446 kb on + strand, within AZOBR_RS28350 at 533.446 kb on + strand, within AZOBR_RS28350 at 533.447 kb on - strand, within AZOBR_RS28350 at 533.447 kb on - strand, within AZOBR_RS28350 at 533.482 kb on + strand, within AZOBR_RS28350 at 533.483 kb on - strand, within AZOBR_RS28350 at 533.706 kb on + strand, within AZOBR_RS28350 at 533.806 kb on + strand at 533.807 kb on - strand at 533.809 kb on + strand at 533.809 kb on + strand at 533.809 kb on + strand at 533.809 kb on + strand at 533.810 kb on - strand at 533.810 kb on - strand at 533.815 kb on - strand at 533.815 kb on - strand at 533.815 kb on - strand at 533.937 kb on - strand at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.376 kb on + strand, within AZOBR_RS28355 at 534.377 kb on - strand, within AZOBR_RS28355 at 534.377 kb on - strand, within AZOBR_RS28355 at 534.413 kb on + strand, within AZOBR_RS28355 at 534.413 kb on + strand, within AZOBR_RS28355 at 534.414 kb on - strand, within AZOBR_RS28355 at 534.465 kb on + strand, within AZOBR_RS28355 at 534.480 kb on + strand, within AZOBR_RS28355 at 534.481 kb on - strand, within AZOBR_RS28355 at 534.576 kb on + strand, within AZOBR_RS28355 at 534.738 kb on + strand, within AZOBR_RS28355 at 534.738 kb on + strand, within AZOBR_RS28355 at 534.739 kb on - strand, within AZOBR_RS28355 at 534.754 kb on - strand, within AZOBR_RS28355 at 534.782 kb on + strand, within AZOBR_RS28355 at 534.831 kb on + strand, within AZOBR_RS28355 at 534.861 kb on + strand, within AZOBR_RS28355
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 531,783 + +0.3 531,972 + +0.6 531,972 + -2.0 531,973 - -0.1 532,888 + +0.4 532,889 - +2.0 532,889 - -0.3 533,105 + AZOBR_RS28350 0.29 +1.1 533,106 - AZOBR_RS28350 0.29 -1.4 533,239 + AZOBR_RS28350 0.41 -1.3 533,239 + AZOBR_RS28350 0.41 -1.9 533,240 - AZOBR_RS28350 0.41 +0.9 533,240 - AZOBR_RS28350 0.41 -2.6 533,240 - AZOBR_RS28350 0.41 -1.6 533,240 - AZOBR_RS28350 0.41 -1.0 533,240 - AZOBR_RS28350 0.41 -0.0 533,389 - AZOBR_RS28350 0.55 -0.6 533,446 + AZOBR_RS28350 0.60 +0.6 533,446 + AZOBR_RS28350 0.60 -0.2 533,447 - AZOBR_RS28350 0.60 +0.6 533,447 - AZOBR_RS28350 0.60 -1.2 533,482 + AZOBR_RS28350 0.63 -0.1 533,483 - AZOBR_RS28350 0.63 +0.1 533,706 + AZOBR_RS28350 0.84 +0.1 533,806 + +0.3 533,807 - -1.2 533,809 + +0.4 533,809 + -2.2 533,809 + -0.2 533,809 + -2.9 533,810 - +1.3 533,810 - +0.6 533,815 - -1.0 533,815 - -2.1 533,815 - +1.8 533,937 - -1.0 534,376 + AZOBR_RS28355 0.16 -2.1 534,376 + AZOBR_RS28355 0.16 -0.9 534,376 + AZOBR_RS28355 0.16 -0.9 534,376 + AZOBR_RS28355 0.16 -1.2 534,376 + AZOBR_RS28355 0.16 +0.3 534,376 + AZOBR_RS28355 0.16 -0.9 534,377 - AZOBR_RS28355 0.16 +0.2 534,377 - AZOBR_RS28355 0.16 +0.5 534,413 + AZOBR_RS28355 0.19 +1.3 534,413 + AZOBR_RS28355 0.19 +0.1 534,414 - AZOBR_RS28355 0.19 +0.2 534,465 + AZOBR_RS28355 0.24 -0.2 534,480 + AZOBR_RS28355 0.25 -2.2 534,481 - AZOBR_RS28355 0.25 -0.8 534,576 + AZOBR_RS28355 0.34 +1.3 534,738 + AZOBR_RS28355 0.49 -1.3 534,738 + AZOBR_RS28355 0.49 +1.7 534,739 - AZOBR_RS28355 0.49 -3.3 534,754 - AZOBR_RS28355 0.50 -1.0 534,782 + AZOBR_RS28355 0.52 -0.3 534,831 + AZOBR_RS28355 0.57 -0.5 534,861 + AZOBR_RS28355 0.60 -2.7
Or see this region's nucleotide sequence