Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24480 and AZOBR_RS24485 are separated by 5 nucleotides AZOBR_RS24485 and AZOBR_RS24490 are separated by 83 nucleotides AZOBR_RS24490 and AZOBR_RS24500 are separated by 907 nucleotides
AZOBR_RS24480: AZOBR_RS24480 - putative histidine biosynthesis protein, at 553,486 to 554,193
_RS24480
AZOBR_RS24485: AZOBR_RS24485 - aldehyde-activating protein, at 554,199 to 554,720
_RS24485
AZOBR_RS24490: AZOBR_RS24490 - hypothetical protein, at 554,804 to 555,649
_RS24490
AZOBR_RS24500: AZOBR_RS24500 - N(5) N(10)-methenyltetrahydromethanopterin cyclohydrolase, at 556,557 to 557,546
_RS24500
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 554.191 kb on + strand at 554.191 kb on + strand at 554.303 kb on - strand, within AZOBR_RS24485 at 554.303 kb on - strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.739 kb on + strand at 554.740 kb on - strand at 554.740 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.979 kb on - strand, within AZOBR_RS24490 at 555.052 kb on - strand, within AZOBR_RS24490 at 555.052 kb on - strand, within AZOBR_RS24490 at 555.150 kb on + strand, within AZOBR_RS24490 at 555.151 kb on - strand, within AZOBR_RS24490 at 555.831 kb on + strand at 555.832 kb on - strand at 555.832 kb on - strand at 556.041 kb on + strand at 556.041 kb on + strand at 556.042 kb on - strand at 556.045 kb on - strand at 556.045 kb on - strand at 556.164 kb on + strand at 556.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 554,191 + +0.8 554,191 + -0.0 554,303 - AZOBR_RS24485 0.20 -1.2 554,303 - AZOBR_RS24485 0.20 -1.0 554,308 + AZOBR_RS24485 0.21 +0.4 554,308 + AZOBR_RS24485 0.21 -0.5 554,309 - AZOBR_RS24485 0.21 -0.7 554,309 - AZOBR_RS24485 0.21 +1.0 554,309 - AZOBR_RS24485 0.21 +0.7 554,309 - AZOBR_RS24485 0.21 +0.3 554,309 - AZOBR_RS24485 0.21 -0.0 554,739 + -0.6 554,740 - +0.3 554,740 - -0.2 554,881 - -0.6 554,881 - -0.8 554,881 - +2.3 554,881 - +0.1 554,979 - AZOBR_RS24490 0.21 -0.0 555,052 - AZOBR_RS24490 0.29 +0.1 555,052 - AZOBR_RS24490 0.29 -0.7 555,150 + AZOBR_RS24490 0.41 -1.9 555,151 - AZOBR_RS24490 0.41 +2.9 555,831 + -1.5 555,832 - +0.5 555,832 - -1.0 556,041 + -0.2 556,041 + -0.6 556,042 - +1.3 556,045 - -2.6 556,045 - +0.1 556,164 + -1.2 556,165 - -1.6
Or see this region's nucleotide sequence