Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23980 and AZOBR_RS23985 are separated by 171 nucleotides AZOBR_RS23985 and AZOBR_RS23990 are separated by 56 nucleotides AZOBR_RS23990 and AZOBR_RS23995 are separated by 206 nucleotides AZOBR_RS23995 and AZOBR_RS24000 are separated by 9 nucleotides
AZOBR_RS23980: AZOBR_RS23980 - Fis family transcriptional regulator, at 412,142 to 412,840
_RS23980
AZOBR_RS23985: AZOBR_RS23985 - membrane protein, at 413,012 to 413,665
_RS23985
AZOBR_RS23990: AZOBR_RS23990 - ferredoxin, at 413,722 to 415,422
_RS23990
AZOBR_RS23995: AZOBR_RS23995 - Crp/Fnr family transcriptional regulator, at 415,629 to 416,279
_RS23995
AZOBR_RS24000: AZOBR_RS24000 - polyprenyl-pyrophosphate binding protein, at 416,289 to 416,867
_RS24000
Position (kb) 413
414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.728 kb on - strand, within AZOBR_RS23980 at 412.728 kb on - strand, within AZOBR_RS23980 at 412.739 kb on + strand, within AZOBR_RS23980 at 412.739 kb on + strand, within AZOBR_RS23980 at 412.740 kb on - strand, within AZOBR_RS23980 at 412.740 kb on - strand, within AZOBR_RS23980 at 412.740 kb on - strand, within AZOBR_RS23980 at 412.740 kb on - strand, within AZOBR_RS23980 at 412.740 kb on - strand, within AZOBR_RS23980 at 413.009 kb on + strand at 413.012 kb on - strand at 413.600 kb on + strand at 413.600 kb on + strand at 413.600 kb on + strand at 413.600 kb on + strand at 413.600 kb on + strand at 413.600 kb on + strand at 413.600 kb on + strand at 413.601 kb on - strand at 413.601 kb on - strand at 413.601 kb on - strand at 413.601 kb on - strand at 413.601 kb on - strand at 413.601 kb on - strand at 413.601 kb on - strand at 414.725 kb on + strand, within AZOBR_RS23990 at 414.725 kb on + strand, within AZOBR_RS23990 at 414.725 kb on + strand, within AZOBR_RS23990 at 414.725 kb on + strand, within AZOBR_RS23990 at 414.725 kb on + strand, within AZOBR_RS23990 at 414.725 kb on + strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 414.726 kb on - strand, within AZOBR_RS23990 at 415.046 kb on + strand, within AZOBR_RS23990 at 415.047 kb on - strand, within AZOBR_RS23990 at 415.085 kb on + strand, within AZOBR_RS23990 at 415.085 kb on + strand, within AZOBR_RS23990 at 415.533 kb on + strand at 415.533 kb on + strand at 415.533 kb on + strand at 415.533 kb on + strand at 415.533 kb on + strand at 415.534 kb on + strand at 415.534 kb on - strand at 415.534 kb on - strand at 415.534 kb on - strand at 415.669 kb on + strand at 415.670 kb on - strand at 416.290 kb on + strand at 416.291 kb on - strand at 416.291 kb on - strand at 416.291 kb on - strand at 416.353 kb on + strand, within AZOBR_RS24000 at 416.353 kb on + strand, within AZOBR_RS24000 at 416.354 kb on - strand, within AZOBR_RS24000 at 416.354 kb on - strand, within AZOBR_RS24000
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 412,728 - AZOBR_RS23980 0.84 +0.2 412,728 - AZOBR_RS23980 0.84 +0.3 412,739 + AZOBR_RS23980 0.85 +2.3 412,739 + AZOBR_RS23980 0.85 +0.4 412,740 - AZOBR_RS23980 0.86 +0.1 412,740 - AZOBR_RS23980 0.86 +1.3 412,740 - AZOBR_RS23980 0.86 -1.5 412,740 - AZOBR_RS23980 0.86 +0.4 412,740 - AZOBR_RS23980 0.86 -0.9 413,009 + -1.7 413,012 - -1.2 413,600 + -0.3 413,600 + -1.3 413,600 + -0.0 413,600 + +0.3 413,600 + +0.4 413,600 + +0.4 413,600 + +0.7 413,601 - +0.3 413,601 - +0.8 413,601 - +0.9 413,601 - +2.9 413,601 - -0.4 413,601 - -1.3 413,601 - -1.5 414,725 + AZOBR_RS23990 0.59 +0.4 414,725 + AZOBR_RS23990 0.59 +1.6 414,725 + AZOBR_RS23990 0.59 -0.0 414,725 + AZOBR_RS23990 0.59 -0.4 414,725 + AZOBR_RS23990 0.59 +1.3 414,725 + AZOBR_RS23990 0.59 +1.2 414,726 - AZOBR_RS23990 0.59 +0.7 414,726 - AZOBR_RS23990 0.59 +1.0 414,726 - AZOBR_RS23990 0.59 +1.4 414,726 - AZOBR_RS23990 0.59 +0.3 414,726 - AZOBR_RS23990 0.59 +0.6 414,726 - AZOBR_RS23990 0.59 -0.0 414,726 - AZOBR_RS23990 0.59 -0.5 415,046 + AZOBR_RS23990 0.78 -0.6 415,047 - AZOBR_RS23990 0.78 +0.0 415,085 + AZOBR_RS23990 0.80 +0.2 415,085 + AZOBR_RS23990 0.80 -1.6 415,533 + -0.1 415,533 + -2.0 415,533 + -0.9 415,533 + -2.0 415,533 + -3.6 415,534 + -2.5 415,534 - +1.5 415,534 - -0.6 415,534 - +0.9 415,669 + -0.4 415,670 - +1.2 416,290 + +2.4 416,291 - +1.4 416,291 - +0.2 416,291 - -0.9 416,353 + AZOBR_RS24000 0.11 -2.4 416,353 + AZOBR_RS24000 0.11 +1.0 416,354 - AZOBR_RS24000 0.11 -0.8 416,354 - AZOBR_RS24000 0.11 +2.4
Or see this region's nucleotide sequence