Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20740 and AZOBR_RS20745 are separated by 256 nucleotides AZOBR_RS20745 and AZOBR_RS20750 are separated by 29 nucleotides AZOBR_RS20750 and AZOBR_RS20755 overlap by 1 nucleotides AZOBR_RS20755 and AZOBR_RS20760 are separated by 118 nucleotides
AZOBR_RS20740: AZOBR_RS20740 - tRNA methyltransferase, at 1,411,453 to 1,411,926
_RS20740
AZOBR_RS20745: AZOBR_RS20745 - ubiquinol-cytochrome C reductase, at 1,412,183 to 1,412,752
_RS20745
AZOBR_RS20750: AZOBR_RS20750 - cytochrome B, at 1,412,782 to 1,414,050
_RS20750
AZOBR_RS20755: AZOBR_RS20755 - cytochrome C, at 1,414,050 to 1,414,814
_RS20755
AZOBR_RS20760: AZOBR_RS20760 - membrane protein, at 1,414,933 to 1,415,484
_RS20760
Position (kb)
1412
1413
1414
1415 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1411.955 kb on - strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.050 kb on + strand at 1412.051 kb on - strand at 1412.051 kb on - strand at 1412.051 kb on - strand at 1412.051 kb on - strand at 1412.137 kb on + strand at 1412.138 kb on - strand at 1412.159 kb on + strand at 1412.183 kb on - strand at 1412.906 kb on - strand at 1413.127 kb on + strand, within AZOBR_RS20750 at 1413.139 kb on + strand at 1413.140 kb on - strand at 1413.217 kb on + strand, within AZOBR_RS20750 at 1413.665 kb on - strand, within AZOBR_RS20750 at 1413.902 kb on - strand, within AZOBR_RS20750 at 1414.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,411,955 - +0.9 1,412,050 + +1.2 1,412,050 + -1.6 1,412,050 + +0.2 1,412,050 + -0.2 1,412,050 + -0.7 1,412,050 + -1.7 1,412,050 + -1.5 1,412,050 + -0.8 1,412,051 - +0.4 1,412,051 - -0.4 1,412,051 - +0.6 1,412,051 - +0.3 1,412,137 + +0.2 1,412,138 - +0.2 1,412,159 + -0.5 1,412,183 - +2.2 1,412,906 - +2.2 1,413,127 + AZOBR_RS20750 0.27 +2.2 1,413,139 + +2.2 1,413,140 - +2.2 1,413,217 + AZOBR_RS20750 0.34 +2.2 1,413,665 - AZOBR_RS20750 0.70 -2.4 1,413,902 - AZOBR_RS20750 0.88 +2.2 1,414,048 + +2.6
Or see this region's nucleotide sequence