Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14885 and AZOBR_RS14890 are separated by 31 nucleotides AZOBR_RS14890 and AZOBR_RS14895 are separated by 437 nucleotides AZOBR_RS14895 and AZOBR_RS14900 are separated by 239 nucleotides AZOBR_RS14900 and AZOBR_RS14905 are separated by 154 nucleotides
AZOBR_RS14885: AZOBR_RS14885 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 112,441 to 112,947
_RS14885
AZOBR_RS14890: AZOBR_RS14890 - hypothetical protein, at 112,979 to 113,464
_RS14890
AZOBR_RS14895: AZOBR_RS14895 - hypothetical protein, at 113,902 to 114,261
_RS14895
AZOBR_RS14900: AZOBR_RS14900 - hypothetical protein, at 114,501 to 114,761
_RS14900
AZOBR_RS14905: AZOBR_RS14905 - universal stress protein UspA, at 114,916 to 115,785
_RS14905
Position (kb) 113
114
115 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 112.977 kb on + strand at 112.977 kb on + strand at 112.977 kb on + strand at 113.469 kb on - strand at 113.504 kb on + strand at 113.506 kb on + strand at 113.507 kb on - strand at 113.507 kb on - strand at 113.570 kb on + strand at 113.613 kb on + strand at 113.666 kb on + strand at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.963 kb on + strand, within AZOBR_RS14895 at 113.964 kb on - strand, within AZOBR_RS14895 at 113.964 kb on - strand, within AZOBR_RS14895 at 113.964 kb on - strand, within AZOBR_RS14895 at 113.964 kb on - strand, within AZOBR_RS14895 at 114.036 kb on - strand, within AZOBR_RS14895 at 114.188 kb on + strand, within AZOBR_RS14895 at 114.188 kb on + strand, within AZOBR_RS14895 at 114.188 kb on + strand, within AZOBR_RS14895 at 114.189 kb on - strand, within AZOBR_RS14895 at 114.189 kb on - strand, within AZOBR_RS14895 at 114.470 kb on + strand at 114.502 kb on + strand at 114.503 kb on - strand at 114.959 kb on + strand at 114.959 kb on + strand at 114.959 kb on + strand at 114.959 kb on + strand at 114.959 kb on + strand at 114.960 kb on - strand at 114.960 kb on - strand at 114.960 kb on - strand at 115.093 kb on + strand, within AZOBR_RS14905 at 115.094 kb on - strand, within AZOBR_RS14905 at 115.099 kb on + strand, within AZOBR_RS14905
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 112,977 + -0.1 112,977 + -0.3 112,977 + -0.9 113,469 - -0.3 113,504 + +1.1 113,506 + -1.2 113,507 - +2.1 113,507 - +2.1 113,570 + -2.1 113,613 + -2.2 113,666 + -1.9 113,963 + AZOBR_RS14895 0.17 +0.2 113,963 + AZOBR_RS14895 0.17 -2.2 113,963 + AZOBR_RS14895 0.17 -0.9 113,963 + AZOBR_RS14895 0.17 +0.6 113,963 + AZOBR_RS14895 0.17 -2.1 113,963 + AZOBR_RS14895 0.17 -0.4 113,963 + AZOBR_RS14895 0.17 -0.4 113,963 + AZOBR_RS14895 0.17 +0.9 113,964 - AZOBR_RS14895 0.17 -1.9 113,964 - AZOBR_RS14895 0.17 -0.4 113,964 - AZOBR_RS14895 0.17 -1.1 113,964 - AZOBR_RS14895 0.17 +0.1 114,036 - AZOBR_RS14895 0.37 -0.2 114,188 + AZOBR_RS14895 0.79 -0.4 114,188 + AZOBR_RS14895 0.79 -1.8 114,188 + AZOBR_RS14895 0.79 +0.1 114,189 - AZOBR_RS14895 0.80 +0.1 114,189 - AZOBR_RS14895 0.80 -4.0 114,470 + +1.1 114,502 + +1.1 114,503 - +0.1 114,959 + +0.4 114,959 + -0.2 114,959 + +0.4 114,959 + +1.0 114,959 + -1.2 114,960 - -0.1 114,960 - +0.9 114,960 - +1.4 115,093 + AZOBR_RS14905 0.20 -2.4 115,094 - AZOBR_RS14905 0.20 +0.1 115,099 + AZOBR_RS14905 0.21 -0.3
Or see this region's nucleotide sequence