Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03395 and AZOBR_RS03400 are separated by 77 nucleotides AZOBR_RS03400 and AZOBR_RS03405 are separated by 88 nucleotides AZOBR_RS03405 and AZOBR_RS03410 are separated by 70 nucleotides
AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629
_RS03395
AZOBR_RS03400: AZOBR_RS03400 - membrane protein, at 722,707 to 722,898
_RS03400
AZOBR_RS03405: AZOBR_RS03405 - transcriptional regulator, at 722,987 to 723,745
_RS03405
AZOBR_RS03410: AZOBR_RS03410 - multidrug DMT transporter permease, at 723,816 to 724,790
_RS03410
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 722.234 kb on + strand, within AZOBR_RS03395 at 722.695 kb on + strand at 722.696 kb on - strand at 722.696 kb on - strand at 722.857 kb on + strand, within AZOBR_RS03400 at 722.857 kb on + strand, within AZOBR_RS03400 at 722.857 kb on + strand, within AZOBR_RS03400 at 722.858 kb on - strand, within AZOBR_RS03400 at 722.977 kb on + strand at 722.977 kb on + strand at 722.977 kb on + strand at 722.978 kb on - strand at 722.978 kb on - strand at 723.027 kb on - strand at 723.027 kb on - strand at 723.305 kb on + strand at 723.305 kb on + strand, within AZOBR_RS03405 at 723.641 kb on + strand, within AZOBR_RS03405 at 723.704 kb on + strand at 723.937 kb on - strand, within AZOBR_RS03410 at 723.946 kb on - strand, within AZOBR_RS03410 at 723.946 kb on - strand, within AZOBR_RS03410 at 724.059 kb on + strand, within AZOBR_RS03410 at 724.059 kb on + strand, within AZOBR_RS03410 at 724.060 kb on - strand, within AZOBR_RS03410 at 724.060 kb on - strand, within AZOBR_RS03410 at 724.062 kb on + strand, within AZOBR_RS03410 at 724.062 kb on + strand, within AZOBR_RS03410 at 724.063 kb on - strand, within AZOBR_RS03410 at 724.063 kb on - strand, within AZOBR_RS03410 at 724.650 kb on + strand, within AZOBR_RS03410 at 724.650 kb on + strand, within AZOBR_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 722,234 + AZOBR_RS03395 0.41 -2.4 722,695 + -0.5 722,696 - +0.3 722,696 - -0.8 722,857 + AZOBR_RS03400 0.78 -1.0 722,857 + AZOBR_RS03400 0.78 +0.8 722,857 + AZOBR_RS03400 0.78 -1.0 722,858 - AZOBR_RS03400 0.79 -0.5 722,977 + +1.0 722,977 + -1.0 722,977 + -0.9 722,978 - -0.7 722,978 - -1.4 723,027 - -1.0 723,027 - +0.7 723,305 + +2.0 723,305 + AZOBR_RS03405 0.42 +0.7 723,641 + AZOBR_RS03405 0.86 -0.9 723,704 + -0.3 723,937 - AZOBR_RS03410 0.12 +1.3 723,946 - AZOBR_RS03410 0.13 +0.3 723,946 - AZOBR_RS03410 0.13 -0.6 724,059 + AZOBR_RS03410 0.25 +0.7 724,059 + AZOBR_RS03410 0.25 +0.0 724,060 - AZOBR_RS03410 0.25 +1.5 724,060 - AZOBR_RS03410 0.25 -1.3 724,062 + AZOBR_RS03410 0.25 +1.3 724,062 + AZOBR_RS03410 0.25 -2.9 724,063 - AZOBR_RS03410 0.25 -0.5 724,063 - AZOBR_RS03410 0.25 +0.7 724,650 + AZOBR_RS03410 0.86 +3.1 724,650 + AZOBR_RS03410 0.86 +0.2
Or see this region's nucleotide sequence