Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03360 and AZOBR_RS03365 overlap by 4 nucleotides AZOBR_RS03365 and AZOBR_RS03370 are separated by 6 nucleotides
AZOBR_RS03360: AZOBR_RS03360 - glycosyl transferase family 1, at 711,791 to 712,921
_RS03360
AZOBR_RS03365: AZOBR_RS03365 - glycosyl transferase, at 712,918 to 714,189
_RS03365
AZOBR_RS03370: AZOBR_RS03370 - GDP-L-fucose synthase, at 714,196 to 715,176
_RS03370
Position (kb) 712
713
714
715 Strain fitness (log2 ratio) -2
-1
0
1
2 at 712.266 kb on + strand, within AZOBR_RS03360 at 712.407 kb on + strand, within AZOBR_RS03360 at 712.452 kb on + strand, within AZOBR_RS03360 at 712.492 kb on - strand, within AZOBR_RS03360 at 712.500 kb on + strand, within AZOBR_RS03360 at 712.500 kb on + strand, within AZOBR_RS03360 at 712.500 kb on + strand, within AZOBR_RS03360 at 712.500 kb on + strand, within AZOBR_RS03360 at 712.500 kb on + strand, within AZOBR_RS03360 at 712.501 kb on - strand, within AZOBR_RS03360 at 712.501 kb on - strand, within AZOBR_RS03360 at 712.501 kb on - strand, within AZOBR_RS03360 at 712.501 kb on - strand, within AZOBR_RS03360 at 712.633 kb on - strand, within AZOBR_RS03360 at 712.692 kb on + strand, within AZOBR_RS03360 at 712.785 kb on + strand, within AZOBR_RS03360 at 712.785 kb on + strand, within AZOBR_RS03360 at 712.786 kb on - strand, within AZOBR_RS03360 at 712.786 kb on - strand, within AZOBR_RS03360 at 712.786 kb on - strand, within AZOBR_RS03360 at 712.786 kb on - strand, within AZOBR_RS03360 at 712.786 kb on - strand, within AZOBR_RS03360 at 712.786 kb on - strand, within AZOBR_RS03360 at 712.827 kb on + strand at 712.827 kb on + strand at 712.827 kb on + strand at 712.827 kb on + strand at 712.827 kb on + strand at 712.828 kb on - strand at 712.876 kb on - strand at 713.463 kb on - strand, within AZOBR_RS03365 at 713.972 kb on + strand, within AZOBR_RS03365 at 713.972 kb on + strand, within AZOBR_RS03365 at 713.972 kb on + strand, within AZOBR_RS03365 at 713.973 kb on - strand, within AZOBR_RS03365 at 713.973 kb on - strand, within AZOBR_RS03365 at 713.973 kb on - strand, within AZOBR_RS03365 at 714.092 kb on + strand at 714.092 kb on + strand at 714.092 kb on + strand at 714.092 kb on + strand at 714.093 kb on - strand at 714.275 kb on + strand at 714.276 kb on - strand at 714.405 kb on - strand, within AZOBR_RS03370 at 714.491 kb on + strand, within AZOBR_RS03370 at 714.491 kb on + strand, within AZOBR_RS03370 at 714.492 kb on - strand, within AZOBR_RS03370 at 714.492 kb on - strand, within AZOBR_RS03370 at 714.537 kb on - strand, within AZOBR_RS03370 at 714.674 kb on + strand, within AZOBR_RS03370 at 714.674 kb on + strand, within AZOBR_RS03370 at 714.767 kb on + strand, within AZOBR_RS03370 at 714.768 kb on - strand, within AZOBR_RS03370 at 715.001 kb on + strand, within AZOBR_RS03370 at 715.001 kb on + strand, within AZOBR_RS03370 at 715.002 kb on - strand, within AZOBR_RS03370 at 715.002 kb on - strand, within AZOBR_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 712,266 + AZOBR_RS03360 0.42 +1.4 712,407 + AZOBR_RS03360 0.54 -0.0 712,452 + AZOBR_RS03360 0.58 -0.3 712,492 - AZOBR_RS03360 0.62 -0.0 712,500 + AZOBR_RS03360 0.63 +0.8 712,500 + AZOBR_RS03360 0.63 -1.1 712,500 + AZOBR_RS03360 0.63 -0.5 712,500 + AZOBR_RS03360 0.63 +2.3 712,500 + AZOBR_RS03360 0.63 +2.7 712,501 - AZOBR_RS03360 0.63 -1.2 712,501 - AZOBR_RS03360 0.63 +1.0 712,501 - AZOBR_RS03360 0.63 +1.3 712,501 - AZOBR_RS03360 0.63 +1.0 712,633 - AZOBR_RS03360 0.74 +0.9 712,692 + AZOBR_RS03360 0.80 -0.6 712,785 + AZOBR_RS03360 0.88 -0.5 712,785 + AZOBR_RS03360 0.88 +2.1 712,786 - AZOBR_RS03360 0.88 -2.2 712,786 - AZOBR_RS03360 0.88 -1.2 712,786 - AZOBR_RS03360 0.88 +0.4 712,786 - AZOBR_RS03360 0.88 +0.2 712,786 - AZOBR_RS03360 0.88 -0.4 712,786 - AZOBR_RS03360 0.88 -0.3 712,827 + +2.5 712,827 + -0.9 712,827 + +0.7 712,827 + -1.1 712,827 + +0.4 712,828 - -0.3 712,876 - +0.5 713,463 - AZOBR_RS03365 0.43 -0.5 713,972 + AZOBR_RS03365 0.83 -1.3 713,972 + AZOBR_RS03365 0.83 -0.9 713,972 + AZOBR_RS03365 0.83 +0.1 713,973 - AZOBR_RS03365 0.83 -2.5 713,973 - AZOBR_RS03365 0.83 -0.0 713,973 - AZOBR_RS03365 0.83 +1.9 714,092 + +2.1 714,092 + -0.6 714,092 + +2.1 714,092 + +0.5 714,093 - +0.3 714,275 + -0.5 714,276 - +1.0 714,405 - AZOBR_RS03370 0.21 +0.4 714,491 + AZOBR_RS03370 0.30 +0.2 714,491 + AZOBR_RS03370 0.30 +0.1 714,492 - AZOBR_RS03370 0.30 -2.2 714,492 - AZOBR_RS03370 0.30 -0.8 714,537 - AZOBR_RS03370 0.35 -0.4 714,674 + AZOBR_RS03370 0.49 -0.4 714,674 + AZOBR_RS03370 0.49 -0.9 714,767 + AZOBR_RS03370 0.58 -2.0 714,768 - AZOBR_RS03370 0.58 -1.6 715,001 + AZOBR_RS03370 0.82 +0.2 715,001 + AZOBR_RS03370 0.82 -1.1 715,002 - AZOBR_RS03370 0.82 -0.4 715,002 - AZOBR_RS03370 0.82 -2.4
Or see this region's nucleotide sequence