Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02985 and AZOBR_RS02990 are separated by 357 nucleotides AZOBR_RS02990 and AZOBR_RS02995 are separated by 442 nucleotides
AZOBR_RS02985: AZOBR_RS02985 - aconitate hydratase, at 633,545 to 636,235
_RS02985
AZOBR_RS02990: AZOBR_RS02990 - hypothetical protein, at 636,593 to 638,194
_RS02990
AZOBR_RS02995: AZOBR_RS02995 - transcriptional regulator, at 638,637 to 639,491
_RS02995
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 635.631 kb on - strand, within AZOBR_RS02985 at 635.631 kb on - strand, within AZOBR_RS02985 at 635.780 kb on + strand, within AZOBR_RS02985 at 635.781 kb on - strand, within AZOBR_RS02985 at 635.807 kb on + strand, within AZOBR_RS02985 at 635.825 kb on + strand, within AZOBR_RS02985 at 635.825 kb on + strand, within AZOBR_RS02985 at 635.870 kb on + strand, within AZOBR_RS02985 at 636.069 kb on + strand at 636.070 kb on - strand at 636.070 kb on - strand at 636.070 kb on - strand at 636.070 kb on - strand at 636.163 kb on + strand at 636.164 kb on - strand at 636.164 kb on - strand at 636.182 kb on + strand at 636.306 kb on + strand at 636.306 kb on + strand at 636.307 kb on - strand at 636.396 kb on + strand at 636.397 kb on - strand at 636.463 kb on - strand at 636.463 kb on - strand at 636.541 kb on - strand at 636.564 kb on + strand at 636.564 kb on + strand at 636.564 kb on + strand at 636.564 kb on + strand at 636.565 kb on - strand at 636.565 kb on - strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.697 kb on - strand at 636.697 kb on - strand at 636.697 kb on - strand at 636.697 kb on - strand at 637.027 kb on - strand, within AZOBR_RS02990 at 637.290 kb on + strand, within AZOBR_RS02990 at 637.291 kb on - strand, within AZOBR_RS02990 at 637.291 kb on - strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.339 kb on - strand, within AZOBR_RS02990 at 637.626 kb on + strand, within AZOBR_RS02990 at 637.626 kb on + strand, within AZOBR_RS02990 at 637.627 kb on - strand, within AZOBR_RS02990 at 637.627 kb on - strand, within AZOBR_RS02990 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.765 kb on - strand, within AZOBR_RS02990 at 637.852 kb on - strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.100 kb on + strand at 638.101 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.280 kb on + strand at 638.687 kb on - strand at 638.687 kb on - strand at 638.893 kb on + strand, within AZOBR_RS02995 at 638.893 kb on + strand, within AZOBR_RS02995 at 638.894 kb on - strand, within AZOBR_RS02995 at 639.110 kb on - strand, within AZOBR_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 635,631 - AZOBR_RS02985 0.78 +0.8 635,631 - AZOBR_RS02985 0.78 -2.0 635,780 + AZOBR_RS02985 0.83 +0.3 635,781 - AZOBR_RS02985 0.83 +1.3 635,807 + AZOBR_RS02985 0.84 -0.1 635,825 + AZOBR_RS02985 0.85 +1.1 635,825 + AZOBR_RS02985 0.85 -0.0 635,870 + AZOBR_RS02985 0.86 +0.7 636,069 + +0.3 636,070 - +1.4 636,070 - -0.3 636,070 - +0.2 636,070 - +0.5 636,163 + -1.7 636,164 - -0.9 636,164 - +2.9 636,182 + +0.7 636,306 + -1.1 636,306 + -0.5 636,307 - +0.9 636,396 + +0.7 636,397 - +0.8 636,463 - +0.6 636,463 - +0.4 636,541 - +1.9 636,564 + -0.0 636,564 + +0.4 636,564 + +1.8 636,564 + -1.3 636,565 - -0.6 636,565 - -0.1 636,696 + +1.9 636,696 + +0.4 636,696 + -1.5 636,697 - -0.7 636,697 - +0.7 636,697 - +2.2 636,697 - -1.7 637,027 - AZOBR_RS02990 0.27 -0.7 637,290 + AZOBR_RS02990 0.44 -0.3 637,291 - AZOBR_RS02990 0.44 -2.4 637,291 - AZOBR_RS02990 0.44 -0.3 637,329 + AZOBR_RS02990 0.46 -0.4 637,329 + AZOBR_RS02990 0.46 -0.6 637,329 + AZOBR_RS02990 0.46 +0.2 637,329 + AZOBR_RS02990 0.46 -0.6 637,329 + AZOBR_RS02990 0.46 +0.0 637,330 - AZOBR_RS02990 0.46 -1.3 637,330 - AZOBR_RS02990 0.46 -1.3 637,330 - AZOBR_RS02990 0.46 +0.4 637,330 - AZOBR_RS02990 0.46 -1.1 637,330 - AZOBR_RS02990 0.46 -2.5 637,339 - AZOBR_RS02990 0.47 -3.0 637,626 + AZOBR_RS02990 0.64 -2.0 637,626 + AZOBR_RS02990 0.64 +0.9 637,627 - AZOBR_RS02990 0.65 +0.7 637,627 - AZOBR_RS02990 0.65 -2.8 637,764 + AZOBR_RS02990 0.73 +1.1 637,764 + AZOBR_RS02990 0.73 -0.1 637,765 - AZOBR_RS02990 0.73 -0.7 637,852 - AZOBR_RS02990 0.79 +2.1 638,001 + AZOBR_RS02990 0.88 -0.2 638,001 + AZOBR_RS02990 0.88 +0.7 638,001 + AZOBR_RS02990 0.88 -1.0 638,002 - AZOBR_RS02990 0.88 +0.9 638,002 - AZOBR_RS02990 0.88 +0.4 638,100 + -0.1 638,101 - +0.6 638,188 - -0.8 638,188 - +0.6 638,188 - +0.6 638,280 + +0.8 638,687 - -1.8 638,687 - -1.2 638,893 + AZOBR_RS02995 0.30 -0.5 638,893 + AZOBR_RS02995 0.30 -2.7 638,894 - AZOBR_RS02995 0.30 +0.7 639,110 - AZOBR_RS02995 0.55 -4.0
Or see this region's nucleotide sequence