Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01500 and AZOBR_RS01505 are separated by 44 nucleotides AZOBR_RS01505 and AZOBR_RS01510 are separated by 101 nucleotides AZOBR_RS01510 and AZOBR_RS01515 are separated by 173 nucleotides
AZOBR_RS01500: AZOBR_RS01500 - alanine acetyltransferase, at 310,085 to 310,549
_RS01500
AZOBR_RS01505: AZOBR_RS01505 - peptidase, at 310,594 to 311,280
_RS01505
AZOBR_RS01510: AZOBR_RS01510 - D-alanyl-D-alanine dipeptidase, at 311,382 to 311,933
_RS01510
AZOBR_RS01515: AZOBR_RS01515 - chitin deacetylase, at 312,107 to 313,147
_RS01515
Position (kb) 311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 311.349 kb on - strand at 311.433 kb on + strand at 311.433 kb on + strand at 311.434 kb on - strand at 311.434 kb on - strand at 311.469 kb on + strand, within AZOBR_RS01510 at 311.565 kb on + strand, within AZOBR_RS01510 at 311.628 kb on + strand, within AZOBR_RS01510 at 311.628 kb on + strand, within AZOBR_RS01510 at 311.629 kb on - strand, within AZOBR_RS01510 at 311.629 kb on - strand, within AZOBR_RS01510 at 311.841 kb on + strand, within AZOBR_RS01510 at 311.841 kb on + strand, within AZOBR_RS01510 at 311.842 kb on - strand, within AZOBR_RS01510 at 311.842 kb on - strand, within AZOBR_RS01510 at 311.999 kb on + strand at 311.999 kb on + strand at 311.999 kb on + strand at 311.999 kb on + strand at 311.999 kb on + strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.000 kb on - strand at 312.228 kb on - strand, within AZOBR_RS01515 at 312.317 kb on + strand, within AZOBR_RS01515 at 312.317 kb on + strand, within AZOBR_RS01515 at 312.317 kb on + strand, within AZOBR_RS01515 at 312.423 kb on - strand, within AZOBR_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 311,349 - +0.1 311,433 + -0.5 311,433 + -0.4 311,434 - +0.9 311,434 - +0.5 311,469 + AZOBR_RS01510 0.16 +0.7 311,565 + AZOBR_RS01510 0.33 -1.5 311,628 + AZOBR_RS01510 0.45 -2.2 311,628 + AZOBR_RS01510 0.45 +1.7 311,629 - AZOBR_RS01510 0.45 -2.4 311,629 - AZOBR_RS01510 0.45 +0.5 311,841 + AZOBR_RS01510 0.83 +2.4 311,841 + AZOBR_RS01510 0.83 +1.3 311,842 - AZOBR_RS01510 0.83 -0.3 311,842 - AZOBR_RS01510 0.83 +0.5 311,999 + -1.0 311,999 + -0.4 311,999 + -3.3 311,999 + +1.3 311,999 + +1.1 312,000 - +0.7 312,000 - +2.2 312,000 - +0.9 312,000 - -1.7 312,000 - +1.4 312,000 - +1.5 312,000 - +0.0 312,000 - +0.3 312,228 - AZOBR_RS01515 0.12 -2.7 312,317 + AZOBR_RS01515 0.20 -0.6 312,317 + AZOBR_RS01515 0.20 +2.0 312,317 + AZOBR_RS01515 0.20 -1.3 312,423 - AZOBR_RS01515 0.30 +0.8
Or see this region's nucleotide sequence